Experiment: ALP with nitrate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3175 and Dsui_3176 overlap by 4 nucleotides Dsui_3176 and Dsui_3177 overlap by 4 nucleotides Dsui_3177 and Dsui_3178 overlap by 10 nucleotides
Dsui_3175: Dsui_3175 - efflux transporter, outer membrane factor lipoprotein, NodT family, at 3,405,366 to 3,406,901
_3175
Dsui_3176: Dsui_3176 - RND family efflux transporter, MFP subunit, at 3,406,898 to 3,408,184
_3176
Dsui_3177: Dsui_3177 - ABC-type antimicrobial peptide transport system, ATPase component, at 3,408,181 to 3,408,909
_3177
Dsui_3178: Dsui_3178 - ABC-type antimicrobial peptide transport system, permease component, at 3,408,900 to 3,410,111
_3178
Position (kb)
3406
3407
3408
3409 Strain fitness (log2 ratio)
-2
-1
0
1 at 3405.909 kb on - strand at 3405.929 kb on + strand at 3405.962 kb on + strand, within Dsui_3175 at 3406.105 kb on - strand at 3406.515 kb on + strand, within Dsui_3175 at 3406.711 kb on + strand at 3406.779 kb on + strand at 3406.834 kb on + strand at 3406.871 kb on + strand at 3406.883 kb on + strand at 3406.984 kb on + strand at 3407.485 kb on + strand, within Dsui_3176 at 3407.496 kb on + strand at 3407.619 kb on + strand, within Dsui_3176 at 3408.046 kb on - strand at 3408.087 kb on + strand at 3408.159 kb on + strand at 3408.399 kb on + strand at 3408.407 kb on - strand at 3408.516 kb on - strand, within Dsui_3177 at 3408.518 kb on + strand, within Dsui_3177 at 3408.791 kb on - strand, within Dsui_3177 at 3408.925 kb on - strand at 3408.974 kb on + strand at 3408.977 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM remove 3,405,909 - +0.5 3,405,929 + +0.5 3,405,962 + Dsui_3175 0.39 +0.5 3,406,105 - +0.5 3,406,515 + Dsui_3175 0.75 -1.8 3,406,711 + +0.5 3,406,779 + -1.1 3,406,834 + -1.5 3,406,871 + +0.5 3,406,883 + -0.5 3,406,984 + -1.0 3,407,485 + Dsui_3176 0.46 -0.5 3,407,496 + +0.5 3,407,619 + Dsui_3176 0.56 -1.5 3,408,046 - +0.5 3,408,087 + -1.0 3,408,159 + +0.5 3,408,399 + -1.0 3,408,407 - -0.5 3,408,516 - Dsui_3177 0.46 -1.0 3,408,518 + Dsui_3177 0.46 +0.5 3,408,791 - Dsui_3177 0.84 -2.3 3,408,925 - +0.5 3,408,974 + +0.5 3,408,977 - +0.5
Or see this region's nucleotide sequence