Strain Fitness in Dechlorosoma suillum PS around Dsui_3026

Experiment: ALP with nitrate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3024 and Dsui_3025 are separated by 82 nucleotidesDsui_3025 and Dsui_3026 are separated by 110 nucleotidesDsui_3026 and Dsui_3027 overlap by 4 nucleotides Dsui_3024: Dsui_3024 - phosphate transport regulator related to PhoU, at 3,236,158 to 3,236,781 _3024 Dsui_3025: Dsui_3025 - hypothetical protein, at 3,236,864 to 3,237,610 _3025 Dsui_3026: Dsui_3026 - hydrogenase maturation protease, at 3,237,721 to 3,238,218 _3026 Dsui_3027: Dsui_3027 - coenzyme F420-reducing hydrogenase, alpha subunit, at 3,238,215 to 3,239,675 _3027 Position (kb) 3237 3238 3239Strain fitness (log2 ratio) -2 -1 0 1 2at 3236.744 kb on + strandat 3236.752 kb on - strandat 3236.909 kb on - strandat 3237.269 kb on - strand, within Dsui_3025at 3237.311 kb on + strandat 3237.377 kb on + strandat 3237.613 kb on - strandat 3237.823 kb on - strand, within Dsui_3026at 3237.982 kb on - strand, within Dsui_3026at 3238.066 kb on - strand, within Dsui_3026at 3238.228 kb on + strandat 3238.291 kb on - strandat 3238.297 kb on - strandat 3238.524 kb on - strand, within Dsui_3027at 3238.777 kb on - strand, within Dsui_3027at 3238.953 kb on - strand, within Dsui_3027at 3238.978 kb on - strand, within Dsui_3027at 3238.994 kb on + strand, within Dsui_3027at 3239.002 kb on - strand, within Dsui_3027at 3239.034 kb on - strand, within Dsui_3027at 3239.060 kb on - strand, within Dsui_3027

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM
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3,236,744 + -1.1
3,236,752 - -0.3
3,236,909 - +0.5
3,237,269 - Dsui_3025 0.54 +0.5
3,237,311 + +0.5
3,237,377 + -0.5
3,237,613 - +0.5
3,237,823 - Dsui_3026 0.20 -1.8
3,237,982 - Dsui_3026 0.52 -0.5
3,238,066 - Dsui_3026 0.69 -1.1
3,238,228 + -1.1
3,238,291 - +0.5
3,238,297 - -1.1
3,238,524 - Dsui_3027 0.21 +0.5
3,238,777 - Dsui_3027 0.38 +2.1
3,238,953 - Dsui_3027 0.51 +0.5
3,238,978 - Dsui_3027 0.52 -0.5
3,238,994 + Dsui_3027 0.53 +0.5
3,239,002 - Dsui_3027 0.54 -0.5
3,239,034 - Dsui_3027 0.56 +0.5
3,239,060 - Dsui_3027 0.58 +0.5

Or see this region's nucleotide sequence