Experiment: ALP with nitrate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2923 and Dsui_2924 are separated by 12 nucleotides Dsui_2924 and Dsui_2925 are separated by 246 nucleotides
Dsui_2923: Dsui_2923 - esterase/lipase, at 3,125,669 to 3,126,511
_2923
Dsui_2924: Dsui_2924 - hypothetical protein, at 3,126,524 to 3,127,285
_2924
Dsui_2925: Dsui_2925 - propionate--CoA ligase, at 3,127,532 to 3,129,424
_2925
Position (kb)
3126
3127
3128 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3125.599 kb on + strand at 3125.607 kb on - strand at 3125.808 kb on + strand, within Dsui_2923 at 3125.808 kb on + strand, within Dsui_2923 at 3125.814 kb on - strand at 3125.816 kb on - strand at 3125.816 kb on - strand at 3125.949 kb on + strand, within Dsui_2923 at 3126.057 kb on + strand, within Dsui_2923 at 3126.086 kb on + strand, within Dsui_2923 at 3126.094 kb on - strand at 3126.097 kb on + strand, within Dsui_2923 at 3126.097 kb on + strand, within Dsui_2923 at 3126.123 kb on + strand, within Dsui_2923 at 3126.201 kb on + strand at 3126.209 kb on - strand at 3126.290 kb on - strand, within Dsui_2923 at 3126.341 kb on - strand at 3126.360 kb on + strand, within Dsui_2923 at 3126.405 kb on + strand, within Dsui_2923 at 3126.411 kb on - strand, within Dsui_2923 at 3126.411 kb on - strand, within Dsui_2923 at 3126.474 kb on - strand at 3126.494 kb on - strand at 3126.619 kb on - strand, within Dsui_2924 at 3126.775 kb on - strand at 3126.942 kb on - strand, within Dsui_2924 at 3127.041 kb on + strand, within Dsui_2924 at 3127.548 kb on + strand at 3127.556 kb on - strand at 3127.556 kb on - strand at 3127.556 kb on - strand at 3127.785 kb on + strand, within Dsui_2925 at 3127.793 kb on - strand, within Dsui_2925 at 3127.840 kb on - strand, within Dsui_2925 at 3127.869 kb on - strand, within Dsui_2925 at 3127.874 kb on - strand, within Dsui_2925 at 3127.943 kb on + strand at 3127.995 kb on + strand, within Dsui_2925 at 3128.010 kb on + strand, within Dsui_2925 at 3128.018 kb on - strand, within Dsui_2925 at 3128.020 kb on + strand, within Dsui_2925 at 3128.117 kb on - strand, within Dsui_2925 at 3128.173 kb on - strand, within Dsui_2925 at 3128.188 kb on - strand, within Dsui_2925 at 3128.209 kb on + strand, within Dsui_2925 at 3128.233 kb on + strand, within Dsui_2925 at 3128.247 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM remove 3,125,599 + -1.0 3,125,607 - -0.4 3,125,808 + Dsui_2923 0.16 +0.2 3,125,808 + Dsui_2923 0.16 -0.3 3,125,814 - +0.6 3,125,816 - +0.6 3,125,816 - +0.6 3,125,949 + Dsui_2923 0.33 +0.1 3,126,057 + Dsui_2923 0.46 -0.4 3,126,086 + Dsui_2923 0.49 -0.8 3,126,094 - +0.6 3,126,097 + Dsui_2923 0.51 -0.1 3,126,097 + Dsui_2923 0.51 -0.1 3,126,123 + Dsui_2923 0.54 +0.3 3,126,201 + -0.8 3,126,209 - -1.8 3,126,290 - Dsui_2923 0.74 -2.9 3,126,341 - +0.6 3,126,360 + Dsui_2923 0.82 -1.8 3,126,405 + Dsui_2923 0.87 -0.4 3,126,411 - Dsui_2923 0.88 -1.0 3,126,411 - Dsui_2923 0.88 +0.6 3,126,474 - -0.4 3,126,494 - -2.0 3,126,619 - Dsui_2924 0.12 +0.6 3,126,775 - +0.6 3,126,942 - Dsui_2924 0.55 +0.6 3,127,041 + Dsui_2924 0.68 -2.6 3,127,548 + -0.4 3,127,556 - -0.2 3,127,556 - -0.2 3,127,556 - -0.2 3,127,785 + Dsui_2925 0.13 -0.4 3,127,793 - Dsui_2925 0.14 -0.4 3,127,840 - Dsui_2925 0.16 -0.6 3,127,869 - Dsui_2925 0.18 -0.6 3,127,874 - Dsui_2925 0.18 -0.5 3,127,943 + +0.6 3,127,995 + Dsui_2925 0.24 -0.4 3,128,010 + Dsui_2925 0.25 -1.8 3,128,018 - Dsui_2925 0.26 -0.4 3,128,020 + Dsui_2925 0.26 -0.4 3,128,117 - Dsui_2925 0.31 -0.6 3,128,173 - Dsui_2925 0.34 -0.3 3,128,188 - Dsui_2925 0.35 -0.1 3,128,209 + Dsui_2925 0.36 -1.4 3,128,233 + Dsui_2925 0.37 +0.6 3,128,247 + +0.6
Or see this region's nucleotide sequence