Experiment: ALP with nitrate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2920 and Dsui_2921 overlap by 4 nucleotides Dsui_2921 and Dsui_2922 are separated by 18 nucleotides
Dsui_2920: Dsui_2920 - acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II, at 3,120,809 to 3,122,239
_2920
Dsui_2921: Dsui_2921 - isochorismate synthase family protein, at 3,122,236 to 3,123,675
_2921
Dsui_2922: Dsui_2922 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase, at 3,123,694 to 3,125,469
_2922
Position (kb)
3122
3123
3124 Strain fitness (log2 ratio)
-2
-1
0
1 at 3121.262 kb on - strand at 3121.267 kb on - strand at 3121.750 kb on + strand, within Dsui_2920 at 3121.842 kb on - strand at 3121.880 kb on + strand, within Dsui_2920 at 3122.074 kb on - strand at 3122.110 kb on + strand at 3122.123 kb on - strand at 3122.560 kb on + strand at 3122.593 kb on - strand at 3122.596 kb on + strand, within Dsui_2921 at 3122.615 kb on - strand at 3122.713 kb on + strand, within Dsui_2921 at 3122.716 kb on - strand, within Dsui_2921 at 3122.804 kb on - strand at 3122.908 kb on + strand at 3123.106 kb on + strand, within Dsui_2921 at 3123.109 kb on - strand at 3123.496 kb on + strand, within Dsui_2921 at 3123.797 kb on + strand at 3123.815 kb on + strand at 3123.875 kb on + strand, within Dsui_2922 at 3123.899 kb on - strand at 3123.937 kb on - strand, within Dsui_2922 at 3124.034 kb on + strand, within Dsui_2922 at 3124.056 kb on + strand, within Dsui_2922 at 3124.121 kb on + strand, within Dsui_2922 at 3124.189 kb on + strand, within Dsui_2922 at 3124.256 kb on + strand, within Dsui_2922 at 3124.256 kb on + strand, within Dsui_2922 at 3124.397 kb on - strand at 3124.431 kb on + strand, within Dsui_2922 at 3124.431 kb on + strand, within Dsui_2922 at 3124.461 kb on - strand at 3124.549 kb on + strand, within Dsui_2922 at 3124.557 kb on - strand, within Dsui_2922 at 3124.580 kb on + strand at 3124.655 kb on + strand, within Dsui_2922 at 3124.657 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM remove 3,121,262 - -0.4 3,121,267 - +0.6 3,121,750 + Dsui_2920 0.66 +0.6 3,121,842 - +0.6 3,121,880 + Dsui_2920 0.75 -0.4 3,122,074 - +0.6 3,122,110 + -1.0 3,122,123 - -1.0 3,122,560 + -1.0 3,122,593 - +0.6 3,122,596 + Dsui_2921 0.25 -1.2 3,122,615 - -0.4 3,122,713 + Dsui_2921 0.33 -1.6 3,122,716 - Dsui_2921 0.33 -1.4 3,122,804 - -0.4 3,122,908 + +0.6 3,123,106 + Dsui_2921 0.60 -0.8 3,123,109 - +0.6 3,123,496 + Dsui_2921 0.88 -2.4 3,123,797 + +0.6 3,123,815 + +0.6 3,123,875 + Dsui_2922 0.10 -2.0 3,123,899 - -2.0 3,123,937 - Dsui_2922 0.14 -0.4 3,124,034 + Dsui_2922 0.19 -0.0 3,124,056 + Dsui_2922 0.20 -1.4 3,124,121 + Dsui_2922 0.24 -1.4 3,124,189 + Dsui_2922 0.28 +0.6 3,124,256 + Dsui_2922 0.32 -0.4 3,124,256 + Dsui_2922 0.32 +0.6 3,124,397 - +0.6 3,124,431 + Dsui_2922 0.41 -2.2 3,124,431 + Dsui_2922 0.41 -0.4 3,124,461 - -1.0 3,124,549 + Dsui_2922 0.48 -1.0 3,124,557 - Dsui_2922 0.49 -1.7 3,124,580 + +0.6 3,124,655 + Dsui_2922 0.54 -1.4 3,124,657 - +0.6
Or see this region's nucleotide sequence