Experiment: ALP with nitrate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2806 and Dsui_2807 are separated by 130 nucleotides Dsui_2807 and Dsui_2808 are separated by 71 nucleotides
Dsui_2806: Dsui_2806 - PAS domain S-box, at 2,977,521 to 2,980,562
_2806
Dsui_2807: Dsui_2807 - enoyl-CoA hydratase/carnithine racemase, at 2,980,693 to 2,981,481
_2807
Dsui_2808: Dsui_2808 - acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II, at 2,981,553 to 2,983,211
_2808
Position (kb)
2980
2981
2982 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2979.715 kb on - strand, within Dsui_2806 at 2979.753 kb on - strand, within Dsui_2806 at 2979.803 kb on + strand at 2979.811 kb on - strand, within Dsui_2806 at 2979.932 kb on - strand, within Dsui_2806 at 2979.932 kb on - strand, within Dsui_2806 at 2979.952 kb on - strand, within Dsui_2806 at 2980.088 kb on + strand at 2980.121 kb on - strand, within Dsui_2806 at 2980.379 kb on + strand at 2980.553 kb on - strand at 2980.782 kb on - strand, within Dsui_2807 at 2980.953 kb on - strand, within Dsui_2807 at 2980.967 kb on + strand, within Dsui_2807 at 2981.048 kb on + strand at 2981.056 kb on - strand, within Dsui_2807 at 2981.181 kb on - strand, within Dsui_2807 at 2981.227 kb on - strand, within Dsui_2807 at 2981.274 kb on + strand, within Dsui_2807 at 2981.384 kb on - strand, within Dsui_2807 at 2981.389 kb on - strand, within Dsui_2807 at 2981.389 kb on - strand, within Dsui_2807 at 2981.465 kb on + strand at 2981.468 kb on - strand at 2981.517 kb on - strand at 2981.550 kb on + strand at 2981.598 kb on + strand at 2981.657 kb on + strand at 2981.665 kb on - strand at 2981.665 kb on - strand at 2981.675 kb on - strand at 2981.705 kb on + strand at 2981.778 kb on + strand at 2981.894 kb on - strand, within Dsui_2808 at 2981.952 kb on + strand, within Dsui_2808 at 2981.971 kb on + strand, within Dsui_2808 at 2981.973 kb on - strand, within Dsui_2808 at 2982.129 kb on - strand, within Dsui_2808 at 2982.232 kb on + strand, within Dsui_2808 at 2982.343 kb on + strand, within Dsui_2808
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM remove 2,979,715 - Dsui_2806 0.72 +0.7 2,979,753 - Dsui_2806 0.73 -1.9 2,979,803 + -0.3 2,979,811 - Dsui_2806 0.75 -0.9 2,979,932 - Dsui_2806 0.79 +0.3 2,979,932 - Dsui_2806 0.79 +0.7 2,979,952 - Dsui_2806 0.80 -0.3 2,980,088 + +0.7 2,980,121 - Dsui_2806 0.85 +0.7 2,980,379 + +0.7 2,980,553 - +0.1 2,980,782 - Dsui_2807 0.11 -0.9 2,980,953 - Dsui_2807 0.33 -2.3 2,980,967 + Dsui_2807 0.35 -0.3 2,981,048 + -0.3 2,981,056 - Dsui_2807 0.46 +0.7 2,981,181 - Dsui_2807 0.62 -0.2 2,981,227 - Dsui_2807 0.68 -0.6 2,981,274 + Dsui_2807 0.74 -0.3 2,981,384 - Dsui_2807 0.88 +0.7 2,981,389 - Dsui_2807 0.88 +0.7 2,981,389 - Dsui_2807 0.88 -2.3 2,981,465 + +0.7 2,981,468 - +0.7 2,981,517 - -0.7 2,981,550 + -2.3 2,981,598 + -1.3 2,981,657 + +0.7 2,981,665 - -0.7 2,981,665 - -0.5 2,981,675 - -0.1 2,981,705 + +0.7 2,981,778 + -0.3 2,981,894 - Dsui_2808 0.21 -0.1 2,981,952 + Dsui_2808 0.24 +0.7 2,981,971 + Dsui_2808 0.25 -0.3 2,981,973 - Dsui_2808 0.25 +3.0 2,982,129 - Dsui_2808 0.35 -0.6 2,982,232 + Dsui_2808 0.41 +0.7 2,982,343 + Dsui_2808 0.48 -0.3
Or see this region's nucleotide sequence