Strain Fitness in Dechlorosoma suillum PS around Dsui_2797

Experiment: ALP with nitrate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2796 and Dsui_2797 are separated by 184 nucleotidesDsui_2797 and Dsui_2798 are separated by 291 nucleotides Dsui_2796: Dsui_2796 - NAD-dependent protein deacetylase, SIR2 family, at 2,964,106 to 2,964,867 _2796 Dsui_2797: Dsui_2797 - LysM repeat-containing protein, at 2,965,052 to 2,966,869 _2797 Dsui_2798: Dsui_2798 - arabinose efflux permease family protein, at 2,967,161 to 2,968,381 _2798 Position (kb) 2965 2966 2967Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2964.153 kb on + strandat 2964.268 kb on + strand, within Dsui_2796at 2964.280 kb on + strand, within Dsui_2796at 2964.295 kb on - strandat 2964.305 kb on - strand, within Dsui_2796at 2964.407 kb on + strand, within Dsui_2796at 2964.435 kb on + strand, within Dsui_2796at 2964.450 kb on - strandat 2964.464 kb on + strand, within Dsui_2796at 2964.521 kb on + strand, within Dsui_2796at 2964.600 kb on - strand, within Dsui_2796at 2964.651 kb on + strand, within Dsui_2796at 2964.732 kb on + strand, within Dsui_2796at 2964.750 kb on + strand, within Dsui_2796at 2964.758 kb on - strandat 2964.910 kb on - strandat 2964.937 kb on + strandat 2964.976 kb on - strandat 2965.072 kb on + strandat 2965.080 kb on - strandat 2965.180 kb on - strandat 2965.214 kb on - strandat 2965.256 kb on + strand, within Dsui_2797at 2965.447 kb on + strand, within Dsui_2797at 2965.454 kb on + strand, within Dsui_2797at 2965.558 kb on + strand, within Dsui_2797at 2965.584 kb on + strand, within Dsui_2797at 2965.584 kb on + strand, within Dsui_2797at 2965.592 kb on - strand, within Dsui_2797at 2965.649 kb on + strand, within Dsui_2797at 2965.748 kb on + strand, within Dsui_2797at 2965.868 kb on + strand, within Dsui_2797at 2965.942 kb on + strand, within Dsui_2797at 2965.981 kb on + strand, within Dsui_2797at 2965.981 kb on + strand, within Dsui_2797at 2966.059 kb on + strand, within Dsui_2797at 2966.067 kb on - strand, within Dsui_2797at 2966.098 kb on + strand, within Dsui_2797at 2966.224 kb on + strand, within Dsui_2797at 2966.254 kb on + strand, within Dsui_2797at 2966.261 kb on - strand, within Dsui_2797at 2966.261 kb on - strand, within Dsui_2797at 2966.262 kb on - strand, within Dsui_2797at 2966.546 kb on - strandat 2966.657 kb on - strand, within Dsui_2797at 2966.657 kb on - strand, within Dsui_2797at 2966.694 kb on - strandat 2966.715 kb on - strandat 2966.715 kb on - strandat 2966.738 kb on + strandat 2966.746 kb on - strandat 2966.813 kb on - strandat 2966.981 kb on - strandat 2967.011 kb on + strandat 2967.011 kb on + strandat 2967.019 kb on - strandat 2967.019 kb on - strandat 2967.063 kb on + strandat 2967.180 kb on - strandat 2967.245 kb on + strandat 2967.280 kb on + strandat 2967.288 kb on - strand, within Dsui_2798at 2967.312 kb on - strand, within Dsui_2798at 2967.315 kb on + strand, within Dsui_2798at 2967.789 kb on + strand, within Dsui_2798at 2967.789 kb on + strand, within Dsui_2798

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM
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2,964,153 + -0.5
2,964,268 + Dsui_2796 0.21 -0.4
2,964,280 + Dsui_2796 0.23 +0.0
2,964,295 - +0.7
2,964,305 - Dsui_2796 0.26 +0.7
2,964,407 + Dsui_2796 0.40 -0.2
2,964,435 + Dsui_2796 0.43 -0.8
2,964,450 - +0.7
2,964,464 + Dsui_2796 0.47 +0.3
2,964,521 + Dsui_2796 0.54 -0.7
2,964,600 - Dsui_2796 0.65 +0.7
2,964,651 + Dsui_2796 0.72 -0.6
2,964,732 + Dsui_2796 0.82 +0.5
2,964,750 + Dsui_2796 0.85 -0.3
2,964,758 - +0.7
2,964,910 - -0.9
2,964,937 + +0.2
2,964,976 - +0.7
2,965,072 + -1.2
2,965,080 - -1.3
2,965,180 - +0.7
2,965,214 - -0.9
2,965,256 + Dsui_2797 0.11 -3.7
2,965,447 + Dsui_2797 0.22 -3.2
2,965,454 + Dsui_2797 0.22 -3.8
2,965,558 + Dsui_2797 0.28 -4.2
2,965,584 + Dsui_2797 0.29 -3.2
2,965,584 + Dsui_2797 0.29 -3.2
2,965,592 - Dsui_2797 0.30 -2.8
2,965,649 + Dsui_2797 0.33 -3.5
2,965,748 + Dsui_2797 0.38 -3.9
2,965,868 + Dsui_2797 0.45 -3.9
2,965,942 + Dsui_2797 0.49 -3.6
2,965,981 + Dsui_2797 0.51 -3.0
2,965,981 + Dsui_2797 0.51 -3.7
2,966,059 + Dsui_2797 0.55 -2.7
2,966,067 - Dsui_2797 0.56 -0.9
2,966,098 + Dsui_2797 0.58 -3.4
2,966,224 + Dsui_2797 0.64 -3.1
2,966,254 + Dsui_2797 0.66 -3.4
2,966,261 - Dsui_2797 0.67 -1.7
2,966,261 - Dsui_2797 0.67 +0.7
2,966,262 - Dsui_2797 0.67 -0.3
2,966,546 - -0.3
2,966,657 - Dsui_2797 0.88 -2.1
2,966,657 - Dsui_2797 0.88 +0.7
2,966,694 - +0.7
2,966,715 - -2.1
2,966,715 - -0.3
2,966,738 + -1.5
2,966,746 - -1.9
2,966,813 - -0.9
2,966,981 - -0.3
2,967,011 + -1.3
2,967,011 + +0.7
2,967,019 - -0.9
2,967,019 - +0.7
2,967,063 + -0.9
2,967,180 - +0.7
2,967,245 + -1.3
2,967,280 + +0.2
2,967,288 - Dsui_2798 0.10 -1.3
2,967,312 - Dsui_2798 0.12 -0.9
2,967,315 + Dsui_2798 0.13 -1.9
2,967,789 + Dsui_2798 0.51 -0.3
2,967,789 + Dsui_2798 0.51 +0.7

Or see this region's nucleotide sequence