Strain Fitness in Dechlorosoma suillum PS around Dsui_2791

Experiment: ALP with nitrate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2789 and Dsui_2790 are separated by 66 nucleotidesDsui_2790 and Dsui_2791 are separated by 23 nucleotidesDsui_2791 and Dsui_2792 are separated by 89 nucleotidesDsui_2792 and Dsui_2793 are separated by 232 nucleotidesDsui_2793 and Dsui_2794 are separated by 23 nucleotidesDsui_2794 and Dsui_2795 are separated by 55 nucleotidesDsui_2795 and Dsui_2796 are separated by 77 nucleotides Dsui_2789: Dsui_2789 - glutamyl-tRNA synthetase, at 2,961,691 to 2,963,082 _2789 Dsui_2790: Dsui_2790 - tRNA-Ala, at 2,963,149 to 2,963,224 _2790 Dsui_2791: Dsui_2791 - tRNA-Glu, at 2,963,248 to 2,963,323 _2791 Dsui_2792: Dsui_2792 - tRNA-Asp, at 2,963,413 to 2,963,489 _2792 Dsui_2793: Dsui_2793 - tRNA-Ala, at 2,963,722 to 2,963,797 _2793 Dsui_2794: Dsui_2794 - tRNA-Glu, at 2,963,821 to 2,963,896 _2794 Dsui_2795: Dsui_2795 - tRNA-Asp, at 2,963,952 to 2,964,028 _2795 Dsui_2796: Dsui_2796 - NAD-dependent protein deacetylase, SIR2 family, at 2,964,106 to 2,964,867 _2796 Position (kb) 2963 2964Strain fitness (log2 ratio) -2 -1 0 1at 2963.099 kb on + strandat 2963.107 kb on - strandat 2963.323 kb on + strandat 2963.360 kb on + strandat 2963.385 kb on + strandat 2963.550 kb on + strandat 2963.550 kb on + strandat 2963.582 kb on + strandat 2963.583 kb on + strandat 2963.631 kb on + strandat 2963.636 kb on + strandat 2963.937 kb on + strandat 2963.937 kb on + strandat 2964.153 kb on + strandat 2964.268 kb on + strand, within Dsui_2796at 2964.280 kb on + strand, within Dsui_2796at 2964.295 kb on - strandat 2964.305 kb on - strand, within Dsui_2796

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM
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2,963,099 + +0.0
2,963,107 - +0.7
2,963,323 + +0.0
2,963,360 + +0.2
2,963,385 + +0.1
2,963,550 + -2.5
2,963,550 + -0.9
2,963,582 + -2.5
2,963,583 + -1.3
2,963,631 + -0.3
2,963,636 + +0.7
2,963,937 + +0.2
2,963,937 + +0.2
2,964,153 + -0.5
2,964,268 + Dsui_2796 0.21 -0.4
2,964,280 + Dsui_2796 0.23 +0.0
2,964,295 - +0.7
2,964,305 - Dsui_2796 0.26 +0.7

Or see this region's nucleotide sequence