Strain Fitness in Dechlorosoma suillum PS around Dsui_2787

Experiment: ALP with nitrate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2786 and Dsui_2787 are separated by 346 nucleotides Dsui_2786: Dsui_2786 - type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit, at 2,955,586 to 2,957,559 _2786 Dsui_2787: Dsui_2787 - membrane carboxypeptidase/penicillin-binding protein, at 2,957,906 to 2,960,278 _2787 Position (kb) 2957 2958 2959 2960 2961Strain fitness (log2 ratio) -2 -1 0 1at 2957.615 kb on - strandat 2957.710 kb on - strandat 2957.854 kb on + strandat 2958.007 kb on - strandat 2958.095 kb on + strandat 2958.284 kb on + strandat 2958.375 kb on + strandat 2958.375 kb on + strandat 2958.393 kb on + strand, within Dsui_2787at 2958.401 kb on - strand, within Dsui_2787at 2958.431 kb on + strand, within Dsui_2787at 2958.490 kb on + strand, within Dsui_2787at 2958.561 kb on + strand, within Dsui_2787at 2958.694 kb on - strand, within Dsui_2787at 2958.734 kb on + strandat 2958.845 kb on + strand, within Dsui_2787at 2958.845 kb on + strand, within Dsui_2787at 2958.852 kb on - strandat 2959.004 kb on + strandat 2959.037 kb on - strand, within Dsui_2787at 2959.128 kb on + strand, within Dsui_2787at 2959.200 kb on + strandat 2959.218 kb on - strand, within Dsui_2787at 2959.400 kb on - strandat 2959.400 kb on - strandat 2959.471 kb on + strand, within Dsui_2787at 2959.479 kb on - strand, within Dsui_2787at 2959.512 kb on + strand, within Dsui_2787at 2959.520 kb on - strand, within Dsui_2787at 2959.590 kb on + strandat 2959.590 kb on + strand, within Dsui_2787at 2959.702 kb on + strand, within Dsui_2787at 2959.821 kb on + strand, within Dsui_2787at 2959.837 kb on + strandat 2959.886 kb on + strandat 2959.902 kb on + strand, within Dsui_2787at 2959.914 kb on - strand, within Dsui_2787at 2959.967 kb on - strand, within Dsui_2787at 2960.059 kb on - strandat 2960.115 kb on - strandat 2960.390 kb on + strandat 2960.541 kb on + strandat 2960.583 kb on - strandat 2960.618 kb on - strandat 2960.657 kb on + strandat 2960.662 kb on - strandat 2960.674 kb on + strandat 2960.785 kb on - strandat 2960.785 kb on - strandat 2960.895 kb on - strandat 2960.895 kb on - strandat 2960.895 kb on - strandat 2960.919 kb on - strandat 2960.961 kb on - strandat 2960.961 kb on - strandat 2961.025 kb on - strandat 2961.140 kb on - strandat 2961.140 kb on - strandat 2961.237 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM
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2,957,615 - +0.2
2,957,710 - -0.9
2,957,854 + +0.7
2,958,007 - -0.3
2,958,095 + -0.3
2,958,284 + +0.7
2,958,375 + -0.3
2,958,375 + +0.7
2,958,393 + Dsui_2787 0.21 -0.9
2,958,401 - Dsui_2787 0.21 -0.9
2,958,431 + Dsui_2787 0.22 -0.9
2,958,490 + Dsui_2787 0.25 +0.7
2,958,561 + Dsui_2787 0.28 -0.3
2,958,694 - Dsui_2787 0.33 +0.7
2,958,734 + +0.7
2,958,845 + Dsui_2787 0.40 -1.6
2,958,845 + Dsui_2787 0.40 -0.3
2,958,852 - +0.7
2,959,004 + -0.3
2,959,037 - Dsui_2787 0.48 -0.3
2,959,128 + Dsui_2787 0.51 -0.3
2,959,200 + -0.9
2,959,218 - Dsui_2787 0.55 -0.9
2,959,400 - +0.7
2,959,400 - -0.3
2,959,471 + Dsui_2787 0.66 -2.5
2,959,479 - Dsui_2787 0.66 -0.9
2,959,512 + Dsui_2787 0.68 +0.7
2,959,520 - Dsui_2787 0.68 -1.3
2,959,590 + +0.7
2,959,590 + Dsui_2787 0.71 -1.3
2,959,702 + Dsui_2787 0.76 -0.9
2,959,821 + Dsui_2787 0.81 +0.7
2,959,837 + +0.7
2,959,886 + +0.7
2,959,902 + Dsui_2787 0.84 -1.9
2,959,914 - Dsui_2787 0.85 -0.3
2,959,967 - Dsui_2787 0.87 -0.9
2,960,059 - +0.7
2,960,115 - +0.7
2,960,390 + -0.9
2,960,541 + -1.3
2,960,583 - -0.3
2,960,618 - +0.7
2,960,657 + +0.7
2,960,662 - +0.7
2,960,674 + -1.3
2,960,785 - +0.7
2,960,785 - +0.7
2,960,895 - -1.3
2,960,895 - -0.9
2,960,895 - -0.3
2,960,919 - +0.7
2,960,961 - +0.7
2,960,961 - +1.3
2,961,025 - -1.6
2,961,140 - -0.3
2,961,140 - +0.7
2,961,237 - +0.7

Or see this region's nucleotide sequence