Experiment: ALP with nitrate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2769 and Dsui_2770 are separated by 7 nucleotides Dsui_2770 and Dsui_2771 are separated by 103 nucleotides Dsui_2771 and Dsui_2772 are separated by 209 nucleotides
Dsui_2769: Dsui_2769 - large extracellular alpha-helical protein, at 2,927,272 to 2,932,953
_2769
Dsui_2770: Dsui_2770 - penicillin-binding protein 1C, at 2,932,961 to 2,935,231
_2770
Dsui_2771: Dsui_2771 - hypothetical protein, at 2,935,335 to 2,935,880
_2771
Dsui_2772: Dsui_2772 - uncharacterized protein, possibly involved in aromatic compounds catabolism, at 2,936,090 to 2,936,551
_2772
Position (kb)
2932
2933
2934
2935
2936 Strain fitness (log2 ratio)
-2
-1
0
1 at 2932.067 kb on - strand at 2932.102 kb on + strand at 2932.160 kb on - strand at 2932.160 kb on - strand at 2932.276 kb on + strand at 2932.402 kb on + strand at 2932.404 kb on - strand at 2932.470 kb on + strand at 2932.651 kb on - strand at 2932.656 kb on - strand at 2932.704 kb on + strand at 2932.748 kb on + strand at 2932.793 kb on + strand at 2932.943 kb on - strand at 2933.017 kb on + strand at 2933.068 kb on - strand at 2933.340 kb on + strand, within Dsui_2770 at 2933.703 kb on - strand at 2933.823 kb on + strand at 2933.853 kb on + strand at 2933.923 kb on + strand at 2934.018 kb on - strand, within Dsui_2770 at 2934.062 kb on - strand at 2934.198 kb on + strand at 2934.234 kb on - strand at 2934.315 kb on + strand at 2934.328 kb on - strand at 2934.384 kb on - strand at 2934.471 kb on - strand at 2934.602 kb on + strand at 2934.996 kb on + strand at 2935.199 kb on - strand at 2935.397 kb on + strand at 2935.397 kb on + strand at 2935.405 kb on - strand, within Dsui_2771 at 2935.405 kb on - strand, within Dsui_2771 at 2935.425 kb on - strand, within Dsui_2771 at 2935.467 kb on - strand, within Dsui_2771 at 2935.472 kb on - strand, within Dsui_2771 at 2935.472 kb on - strand, within Dsui_2771 at 2935.485 kb on - strand, within Dsui_2771 at 2935.522 kb on - strand, within Dsui_2771 at 2935.534 kb on - strand, within Dsui_2771 at 2935.564 kb on + strand at 2935.572 kb on - strand, within Dsui_2771 at 2935.572 kb on - strand, within Dsui_2771 at 2935.701 kb on + strand at 2935.855 kb on - strand at 2936.106 kb on - strand at 2936.230 kb on - strand, within Dsui_2772
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM remove 2,932,067 - +0.7 2,932,102 + +0.7 2,932,160 - -0.3 2,932,160 - +0.7 2,932,276 + -0.3 2,932,402 + +0.7 2,932,404 - +0.7 2,932,470 + -2.3 2,932,651 - -1.3 2,932,656 - +0.7 2,932,704 + -0.3 2,932,748 + +0.1 2,932,793 + -0.3 2,932,943 - -0.9 2,933,017 + -0.9 2,933,068 - -1.9 2,933,340 + Dsui_2770 0.17 +0.7 2,933,703 - -1.3 2,933,823 + +0.7 2,933,853 + +0.7 2,933,923 + +0.7 2,934,018 - Dsui_2770 0.47 -1.6 2,934,062 - -0.3 2,934,198 + -0.3 2,934,234 - +0.7 2,934,315 + -1.6 2,934,328 - +0.7 2,934,384 - -0.3 2,934,471 - -0.3 2,934,602 + -0.3 2,934,996 + -0.9 2,935,199 - -0.9 2,935,397 + +0.7 2,935,397 + -0.3 2,935,405 - Dsui_2771 0.13 -0.0 2,935,405 - Dsui_2771 0.13 +0.1 2,935,425 - Dsui_2771 0.16 +0.4 2,935,467 - Dsui_2771 0.24 -0.4 2,935,472 - Dsui_2771 0.25 +0.1 2,935,472 - Dsui_2771 0.25 +0.3 2,935,485 - Dsui_2771 0.27 -0.5 2,935,522 - Dsui_2771 0.34 -0.2 2,935,534 - Dsui_2771 0.36 +0.0 2,935,564 + -0.9 2,935,572 - Dsui_2771 0.43 +0.3 2,935,572 - Dsui_2771 0.43 +0.2 2,935,701 + +0.7 2,935,855 - -0.3 2,936,106 - +0.7 2,936,230 - Dsui_2772 0.30 -2.5
Or see this region's nucleotide sequence