Strain Fitness in Dechlorosoma suillum PS around Dsui_2770

Experiment: ALP with nitrate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2769 and Dsui_2770 are separated by 7 nucleotidesDsui_2770 and Dsui_2771 are separated by 103 nucleotidesDsui_2771 and Dsui_2772 are separated by 209 nucleotides Dsui_2769: Dsui_2769 - large extracellular alpha-helical protein, at 2,927,272 to 2,932,953 _2769 Dsui_2770: Dsui_2770 - penicillin-binding protein 1C, at 2,932,961 to 2,935,231 _2770 Dsui_2771: Dsui_2771 - hypothetical protein, at 2,935,335 to 2,935,880 _2771 Dsui_2772: Dsui_2772 - uncharacterized protein, possibly involved in aromatic compounds catabolism, at 2,936,090 to 2,936,551 _2772 Position (kb) 2932 2933 2934 2935 2936Strain fitness (log2 ratio) -2 -1 0 1at 2932.067 kb on - strandat 2932.102 kb on + strandat 2932.160 kb on - strandat 2932.160 kb on - strandat 2932.276 kb on + strandat 2932.402 kb on + strandat 2932.404 kb on - strandat 2932.470 kb on + strandat 2932.651 kb on - strandat 2932.656 kb on - strandat 2932.704 kb on + strandat 2932.748 kb on + strandat 2932.793 kb on + strandat 2932.943 kb on - strandat 2933.017 kb on + strandat 2933.068 kb on - strandat 2933.340 kb on + strand, within Dsui_2770at 2933.703 kb on - strandat 2933.823 kb on + strandat 2933.853 kb on + strandat 2933.923 kb on + strandat 2934.018 kb on - strand, within Dsui_2770at 2934.062 kb on - strandat 2934.198 kb on + strandat 2934.234 kb on - strandat 2934.315 kb on + strandat 2934.328 kb on - strandat 2934.384 kb on - strandat 2934.471 kb on - strandat 2934.602 kb on + strandat 2934.996 kb on + strandat 2935.199 kb on - strandat 2935.397 kb on + strandat 2935.397 kb on + strandat 2935.405 kb on - strand, within Dsui_2771at 2935.405 kb on - strand, within Dsui_2771at 2935.425 kb on - strand, within Dsui_2771at 2935.467 kb on - strand, within Dsui_2771at 2935.472 kb on - strand, within Dsui_2771at 2935.472 kb on - strand, within Dsui_2771at 2935.485 kb on - strand, within Dsui_2771at 2935.522 kb on - strand, within Dsui_2771at 2935.534 kb on - strand, within Dsui_2771at 2935.564 kb on + strandat 2935.572 kb on - strand, within Dsui_2771at 2935.572 kb on - strand, within Dsui_2771at 2935.701 kb on + strandat 2935.855 kb on - strandat 2936.106 kb on - strandat 2936.230 kb on - strand, within Dsui_2772

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM
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2,932,067 - +0.7
2,932,102 + +0.7
2,932,160 - -0.3
2,932,160 - +0.7
2,932,276 + -0.3
2,932,402 + +0.7
2,932,404 - +0.7
2,932,470 + -2.3
2,932,651 - -1.3
2,932,656 - +0.7
2,932,704 + -0.3
2,932,748 + +0.1
2,932,793 + -0.3
2,932,943 - -0.9
2,933,017 + -0.9
2,933,068 - -1.9
2,933,340 + Dsui_2770 0.17 +0.7
2,933,703 - -1.3
2,933,823 + +0.7
2,933,853 + +0.7
2,933,923 + +0.7
2,934,018 - Dsui_2770 0.47 -1.6
2,934,062 - -0.3
2,934,198 + -0.3
2,934,234 - +0.7
2,934,315 + -1.6
2,934,328 - +0.7
2,934,384 - -0.3
2,934,471 - -0.3
2,934,602 + -0.3
2,934,996 + -0.9
2,935,199 - -0.9
2,935,397 + +0.7
2,935,397 + -0.3
2,935,405 - Dsui_2771 0.13 -0.0
2,935,405 - Dsui_2771 0.13 +0.1
2,935,425 - Dsui_2771 0.16 +0.4
2,935,467 - Dsui_2771 0.24 -0.4
2,935,472 - Dsui_2771 0.25 +0.1
2,935,472 - Dsui_2771 0.25 +0.3
2,935,485 - Dsui_2771 0.27 -0.5
2,935,522 - Dsui_2771 0.34 -0.2
2,935,534 - Dsui_2771 0.36 +0.0
2,935,564 + -0.9
2,935,572 - Dsui_2771 0.43 +0.3
2,935,572 - Dsui_2771 0.43 +0.2
2,935,701 + +0.7
2,935,855 - -0.3
2,936,106 - +0.7
2,936,230 - Dsui_2772 0.30 -2.5

Or see this region's nucleotide sequence