Strain Fitness in Dechlorosoma suillum PS around Dsui_2739

Experiment: ALP with nitrate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2737 and Dsui_2738 overlap by 8 nucleotidesDsui_2738 and Dsui_2739 are separated by 129 nucleotidesDsui_2739 and Dsui_2740 are separated by 24 nucleotidesDsui_2740 and Dsui_2741 are separated by 11 nucleotides Dsui_2737: Dsui_2737 - glycine dehydrogenase, decarboxylating, at 2,891,117 to 2,894,017 _2737 Dsui_2738: Dsui_2738 - glycine cleavage system regulatory protein, at 2,894,010 to 2,894,537 _2738 Dsui_2739: Dsui_2739 - pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component, at 2,894,667 to 2,894,936 _2739 Dsui_2740: Dsui_2740 - putative integral membrane protein, at 2,894,961 to 2,895,698 _2740 Dsui_2741: Dsui_2741 - PAS domain S-box, at 2,895,710 to 2,896,276 _2741 Position (kb) 2894 2895Strain fitness (log2 ratio) -2 -1 0 1at 2893.898 kb on + strandat 2894.086 kb on + strand, within Dsui_2738at 2894.089 kb on + strand, within Dsui_2738at 2894.161 kb on - strand, within Dsui_2738at 2894.350 kb on + strand, within Dsui_2738at 2894.388 kb on + strand, within Dsui_2738at 2894.388 kb on - strand, within Dsui_2738at 2894.491 kb on - strandat 2894.564 kb on + strandat 2894.619 kb on + strandat 2894.651 kb on + strandat 2894.659 kb on - strandat 2894.702 kb on - strand, within Dsui_2739at 2894.774 kb on - strand, within Dsui_2739at 2894.837 kb on - strand, within Dsui_2739at 2894.839 kb on + strandat 2895.004 kb on - strandat 2895.134 kb on - strand, within Dsui_2740at 2895.151 kb on + strand, within Dsui_2740at 2895.237 kb on - strandat 2895.293 kb on - strand, within Dsui_2740at 2895.343 kb on + strandat 2895.441 kb on + strandat 2895.446 kb on + strand, within Dsui_2740at 2895.494 kb on - strandat 2895.516 kb on - strandat 2895.607 kb on + strand, within Dsui_2740at 2895.658 kb on - strandat 2895.673 kb on + strandat 2895.704 kb on + strandat 2895.712 kb on - strandat 2895.735 kb on + strandat 2895.744 kb on + strandat 2895.759 kb on + strandat 2895.784 kb on + strand, within Dsui_2741at 2895.859 kb on + strand, within Dsui_2741at 2895.864 kb on - strandat 2895.883 kb on - strand, within Dsui_2741

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM
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2,893,898 + -1.4
2,894,086 + Dsui_2738 0.14 -0.4
2,894,089 + Dsui_2738 0.15 -2.7
2,894,161 - Dsui_2738 0.29 +0.6
2,894,350 + Dsui_2738 0.64 -0.9
2,894,388 + Dsui_2738 0.72 +0.6
2,894,388 - Dsui_2738 0.72 -0.4
2,894,491 - -2.7
2,894,564 + +0.6
2,894,619 + +0.6
2,894,651 + -0.9
2,894,659 - +0.6
2,894,702 - Dsui_2739 0.13 -0.4
2,894,774 - Dsui_2739 0.40 -0.4
2,894,837 - Dsui_2739 0.63 -0.4
2,894,839 + +1.6
2,895,004 - -0.4
2,895,134 - Dsui_2740 0.23 -1.4
2,895,151 + Dsui_2740 0.26 +0.6
2,895,237 - +0.6
2,895,293 - Dsui_2740 0.45 -0.9
2,895,343 + -0.4
2,895,441 + +0.6
2,895,446 + Dsui_2740 0.66 -1.7
2,895,494 - +0.6
2,895,516 - +0.6
2,895,607 + Dsui_2740 0.88 -2.4
2,895,658 - +0.6
2,895,673 + +0.7
2,895,704 + -0.9
2,895,712 - -0.9
2,895,735 + -0.3
2,895,744 + -1.7
2,895,759 + +0.7
2,895,784 + Dsui_2741 0.13 -2.2
2,895,859 + Dsui_2741 0.26 +0.7
2,895,864 - +0.7
2,895,883 - Dsui_2741 0.31 +0.7

Or see this region's nucleotide sequence