Experiment: ALP with nitrate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2737 and Dsui_2738 overlap by 8 nucleotides Dsui_2738 and Dsui_2739 are separated by 129 nucleotides Dsui_2739 and Dsui_2740 are separated by 24 nucleotides
Dsui_2737: Dsui_2737 - glycine dehydrogenase, decarboxylating, at 2,891,117 to 2,894,017
_2737
Dsui_2738: Dsui_2738 - glycine cleavage system regulatory protein, at 2,894,010 to 2,894,537
_2738
Dsui_2739: Dsui_2739 - pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component, at 2,894,667 to 2,894,936
_2739
Dsui_2740: Dsui_2740 - putative integral membrane protein, at 2,894,961 to 2,895,698
_2740
Position (kb)
2894
2895 Strain fitness (log2 ratio)
-2
-1
0
1 at 2893.027 kb on + strand, within Dsui_2737 at 2893.072 kb on + strand, within Dsui_2737 at 2893.158 kb on - strand, within Dsui_2737 at 2893.164 kb on + strand, within Dsui_2737 at 2893.217 kb on + strand, within Dsui_2737 at 2893.402 kb on - strand at 2893.532 kb on + strand, within Dsui_2737 at 2893.535 kb on - strand, within Dsui_2737 at 2893.552 kb on - strand, within Dsui_2737 at 2893.898 kb on + strand at 2894.086 kb on + strand, within Dsui_2738 at 2894.089 kb on + strand, within Dsui_2738 at 2894.161 kb on - strand, within Dsui_2738 at 2894.350 kb on + strand, within Dsui_2738 at 2894.388 kb on + strand, within Dsui_2738 at 2894.388 kb on - strand, within Dsui_2738 at 2894.491 kb on - strand at 2894.564 kb on + strand at 2894.619 kb on + strand at 2894.651 kb on + strand at 2894.659 kb on - strand at 2894.702 kb on - strand, within Dsui_2739 at 2894.774 kb on - strand, within Dsui_2739 at 2894.837 kb on - strand, within Dsui_2739 at 2894.839 kb on + strand at 2895.004 kb on - strand at 2895.134 kb on - strand, within Dsui_2740 at 2895.151 kb on + strand, within Dsui_2740 at 2895.237 kb on - strand at 2895.293 kb on - strand, within Dsui_2740 at 2895.343 kb on + strand at 2895.441 kb on + strand at 2895.446 kb on + strand, within Dsui_2740 at 2895.494 kb on - strand at 2895.516 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM remove 2,893,027 + Dsui_2737 0.66 +1.6 2,893,072 + Dsui_2737 0.67 -0.7 2,893,158 - Dsui_2737 0.70 -1.7 2,893,164 + Dsui_2737 0.71 -0.4 2,893,217 + Dsui_2737 0.72 -1.4 2,893,402 - +0.6 2,893,532 + Dsui_2737 0.83 +0.6 2,893,535 - Dsui_2737 0.83 -1.4 2,893,552 - Dsui_2737 0.84 -0.4 2,893,898 + -1.4 2,894,086 + Dsui_2738 0.14 -0.4 2,894,089 + Dsui_2738 0.15 -2.7 2,894,161 - Dsui_2738 0.29 +0.6 2,894,350 + Dsui_2738 0.64 -0.9 2,894,388 + Dsui_2738 0.72 +0.6 2,894,388 - Dsui_2738 0.72 -0.4 2,894,491 - -2.7 2,894,564 + +0.6 2,894,619 + +0.6 2,894,651 + -0.9 2,894,659 - +0.6 2,894,702 - Dsui_2739 0.13 -0.4 2,894,774 - Dsui_2739 0.40 -0.4 2,894,837 - Dsui_2739 0.63 -0.4 2,894,839 + +1.6 2,895,004 - -0.4 2,895,134 - Dsui_2740 0.23 -1.4 2,895,151 + Dsui_2740 0.26 +0.6 2,895,237 - +0.6 2,895,293 - Dsui_2740 0.45 -0.9 2,895,343 + -0.4 2,895,441 + +0.6 2,895,446 + Dsui_2740 0.66 -1.7 2,895,494 - +0.6 2,895,516 - +0.6
Or see this region's nucleotide sequence