Experiment: ALP with nitrate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2487 and Dsui_2488 are separated by 7 nucleotides Dsui_2488 and Dsui_2489 are separated by 6 nucleotides
Dsui_2487: Dsui_2487 - hypothetical protein, at 2,636,061 to 2,637,569
_2487
Dsui_2488: Dsui_2488 - Protein of unknown function (DUF3293), at 2,637,577 to 2,638,059
_2488
Dsui_2489: Dsui_2489 - polyhydroxyalkanoate depolymerase, intracellular, at 2,638,066 to 2,639,286
_2489
Position (kb)
2637
2638
2639 Strain fitness (log2 ratio)
-2
-1
0
1 at 2636.651 kb on + strand, within Dsui_2487 at 2636.659 kb on - strand at 2636.683 kb on + strand, within Dsui_2487 at 2636.683 kb on + strand, within Dsui_2487 at 2636.728 kb on + strand, within Dsui_2487 at 2637.061 kb on + strand, within Dsui_2487 at 2637.069 kb on - strand at 2637.069 kb on - strand at 2637.071 kb on - strand at 2637.115 kb on - strand, within Dsui_2487 at 2637.148 kb on - strand at 2637.148 kb on - strand at 2637.162 kb on + strand, within Dsui_2487 at 2637.193 kb on - strand at 2637.348 kb on + strand, within Dsui_2487 at 2637.348 kb on + strand, within Dsui_2487 at 2637.450 kb on + strand at 2637.505 kb on - strand at 2637.538 kb on + strand at 2637.538 kb on + strand at 2637.559 kb on + strand at 2637.698 kb on + strand, within Dsui_2488 at 2637.756 kb on + strand, within Dsui_2488 at 2637.821 kb on + strand, within Dsui_2488 at 2637.821 kb on + strand, within Dsui_2488 at 2637.915 kb on - strand, within Dsui_2488 at 2637.924 kb on + strand, within Dsui_2488 at 2638.007 kb on + strand, within Dsui_2488 at 2638.023 kb on - strand at 2638.064 kb on + strand at 2638.098 kb on + strand at 2638.098 kb on + strand at 2638.098 kb on + strand at 2638.106 kb on - strand at 2638.106 kb on - strand at 2638.106 kb on - strand at 2638.176 kb on - strand at 2638.195 kb on - strand at 2638.214 kb on - strand, within Dsui_2489 at 2638.280 kb on - strand at 2638.393 kb on + strand at 2638.462 kb on - strand, within Dsui_2489 at 2638.462 kb on - strand, within Dsui_2489 at 2638.595 kb on + strand, within Dsui_2489 at 2638.636 kb on + strand, within Dsui_2489 at 2638.639 kb on + strand at 2638.689 kb on - strand, within Dsui_2489 at 2638.696 kb on - strand, within Dsui_2489 at 2638.840 kb on + strand, within Dsui_2489 at 2638.849 kb on + strand at 2638.972 kb on + strand, within Dsui_2489 at 2639.032 kb on - strand, within Dsui_2489 at 2639.033 kb on + strand, within Dsui_2489
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM remove 2,636,651 + Dsui_2487 0.39 +1.2 2,636,659 - -1.0 2,636,683 + Dsui_2487 0.41 +0.6 2,636,683 + Dsui_2487 0.41 +1.6 2,636,728 + Dsui_2487 0.44 -1.3 2,637,061 + Dsui_2487 0.66 -1.4 2,637,069 - +0.6 2,637,069 - -0.4 2,637,071 - +0.6 2,637,115 - Dsui_2487 0.70 -1.4 2,637,148 - -1.0 2,637,148 - -1.0 2,637,162 + Dsui_2487 0.73 -2.4 2,637,193 - +0.6 2,637,348 + Dsui_2487 0.85 -2.0 2,637,348 + Dsui_2487 0.85 +1.2 2,637,450 + +0.3 2,637,505 - -1.0 2,637,538 + -0.2 2,637,538 + +0.0 2,637,559 + -0.7 2,637,698 + Dsui_2488 0.25 -1.7 2,637,756 + Dsui_2488 0.37 -1.6 2,637,821 + Dsui_2488 0.51 +0.6 2,637,821 + Dsui_2488 0.51 -0.4 2,637,915 - Dsui_2488 0.70 -1.0 2,637,924 + Dsui_2488 0.72 -1.7 2,638,007 + Dsui_2488 0.89 -1.7 2,638,023 - -1.0 2,638,064 + -0.4 2,638,098 + +0.6 2,638,098 + +0.6 2,638,098 + -1.7 2,638,106 - -1.4 2,638,106 - +0.6 2,638,106 - -0.4 2,638,176 - -0.4 2,638,195 - +0.6 2,638,214 - Dsui_2489 0.12 -1.7 2,638,280 - -0.4 2,638,393 + +0.6 2,638,462 - Dsui_2489 0.32 -1.4 2,638,462 - Dsui_2489 0.32 -1.4 2,638,595 + Dsui_2489 0.43 -0.4 2,638,636 + Dsui_2489 0.47 -0.4 2,638,639 + +0.6 2,638,689 - Dsui_2489 0.51 -1.4 2,638,696 - Dsui_2489 0.52 -1.4 2,638,840 + Dsui_2489 0.63 -0.4 2,638,849 + +0.6 2,638,972 + Dsui_2489 0.74 +0.6 2,639,032 - Dsui_2489 0.79 +0.6 2,639,033 + Dsui_2489 0.79 +0.6
Or see this region's nucleotide sequence