Strain Fitness in Dechlorosoma suillum PS around Dsui_2488

Experiment: ALP with nitrate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2487 and Dsui_2488 are separated by 7 nucleotidesDsui_2488 and Dsui_2489 are separated by 6 nucleotides Dsui_2487: Dsui_2487 - hypothetical protein, at 2,636,061 to 2,637,569 _2487 Dsui_2488: Dsui_2488 - Protein of unknown function (DUF3293), at 2,637,577 to 2,638,059 _2488 Dsui_2489: Dsui_2489 - polyhydroxyalkanoate depolymerase, intracellular, at 2,638,066 to 2,639,286 _2489 Position (kb) 2637 2638 2639Strain fitness (log2 ratio) -2 -1 0 1at 2636.651 kb on + strand, within Dsui_2487at 2636.659 kb on - strandat 2636.683 kb on + strand, within Dsui_2487at 2636.683 kb on + strand, within Dsui_2487at 2636.728 kb on + strand, within Dsui_2487at 2637.061 kb on + strand, within Dsui_2487at 2637.069 kb on - strandat 2637.069 kb on - strandat 2637.071 kb on - strandat 2637.115 kb on - strand, within Dsui_2487at 2637.148 kb on - strandat 2637.148 kb on - strandat 2637.162 kb on + strand, within Dsui_2487at 2637.193 kb on - strandat 2637.348 kb on + strand, within Dsui_2487at 2637.348 kb on + strand, within Dsui_2487at 2637.450 kb on + strandat 2637.505 kb on - strandat 2637.538 kb on + strandat 2637.538 kb on + strandat 2637.559 kb on + strandat 2637.698 kb on + strand, within Dsui_2488at 2637.756 kb on + strand, within Dsui_2488at 2637.821 kb on + strand, within Dsui_2488at 2637.821 kb on + strand, within Dsui_2488at 2637.915 kb on - strand, within Dsui_2488at 2637.924 kb on + strand, within Dsui_2488at 2638.007 kb on + strand, within Dsui_2488at 2638.023 kb on - strandat 2638.064 kb on + strandat 2638.098 kb on + strandat 2638.098 kb on + strandat 2638.098 kb on + strandat 2638.106 kb on - strandat 2638.106 kb on - strandat 2638.106 kb on - strandat 2638.176 kb on - strandat 2638.195 kb on - strandat 2638.214 kb on - strand, within Dsui_2489at 2638.280 kb on - strandat 2638.393 kb on + strandat 2638.462 kb on - strand, within Dsui_2489at 2638.462 kb on - strand, within Dsui_2489at 2638.595 kb on + strand, within Dsui_2489at 2638.636 kb on + strand, within Dsui_2489at 2638.639 kb on + strandat 2638.689 kb on - strand, within Dsui_2489at 2638.696 kb on - strand, within Dsui_2489at 2638.840 kb on + strand, within Dsui_2489at 2638.849 kb on + strandat 2638.972 kb on + strand, within Dsui_2489at 2639.032 kb on - strand, within Dsui_2489at 2639.033 kb on + strand, within Dsui_2489

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM
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2,636,651 + Dsui_2487 0.39 +1.2
2,636,659 - -1.0
2,636,683 + Dsui_2487 0.41 +0.6
2,636,683 + Dsui_2487 0.41 +1.6
2,636,728 + Dsui_2487 0.44 -1.3
2,637,061 + Dsui_2487 0.66 -1.4
2,637,069 - +0.6
2,637,069 - -0.4
2,637,071 - +0.6
2,637,115 - Dsui_2487 0.70 -1.4
2,637,148 - -1.0
2,637,148 - -1.0
2,637,162 + Dsui_2487 0.73 -2.4
2,637,193 - +0.6
2,637,348 + Dsui_2487 0.85 -2.0
2,637,348 + Dsui_2487 0.85 +1.2
2,637,450 + +0.3
2,637,505 - -1.0
2,637,538 + -0.2
2,637,538 + +0.0
2,637,559 + -0.7
2,637,698 + Dsui_2488 0.25 -1.7
2,637,756 + Dsui_2488 0.37 -1.6
2,637,821 + Dsui_2488 0.51 +0.6
2,637,821 + Dsui_2488 0.51 -0.4
2,637,915 - Dsui_2488 0.70 -1.0
2,637,924 + Dsui_2488 0.72 -1.7
2,638,007 + Dsui_2488 0.89 -1.7
2,638,023 - -1.0
2,638,064 + -0.4
2,638,098 + +0.6
2,638,098 + +0.6
2,638,098 + -1.7
2,638,106 - -1.4
2,638,106 - +0.6
2,638,106 - -0.4
2,638,176 - -0.4
2,638,195 - +0.6
2,638,214 - Dsui_2489 0.12 -1.7
2,638,280 - -0.4
2,638,393 + +0.6
2,638,462 - Dsui_2489 0.32 -1.4
2,638,462 - Dsui_2489 0.32 -1.4
2,638,595 + Dsui_2489 0.43 -0.4
2,638,636 + Dsui_2489 0.47 -0.4
2,638,639 + +0.6
2,638,689 - Dsui_2489 0.51 -1.4
2,638,696 - Dsui_2489 0.52 -1.4
2,638,840 + Dsui_2489 0.63 -0.4
2,638,849 + +0.6
2,638,972 + Dsui_2489 0.74 +0.6
2,639,032 - Dsui_2489 0.79 +0.6
2,639,033 + Dsui_2489 0.79 +0.6

Or see this region's nucleotide sequence