Experiment: ALP with nitrate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2468 and Dsui_2469 are separated by 39 nucleotides Dsui_2469 and Dsui_2470 are separated by 7 nucleotides Dsui_2470 and Dsui_2471 are separated by 0 nucleotides Dsui_2471 and Dsui_2472 are separated by 81 nucleotides Dsui_2472 and Dsui_2473 are separated by 52 nucleotides Dsui_2473 and Dsui_2474 are separated by 16 nucleotides Dsui_2474 and Dsui_2475 are separated by 48 nucleotides
Dsui_2468: Dsui_2468 - conserved hypothetical protein, PP_1857 family, at 2,624,450 to 2,625,649
_2468
Dsui_2469: Dsui_2469 - uracil-DNA glycosylase, at 2,625,689 to 2,626,351
_2469
Dsui_2470: Dsui_2470 - excinuclease ABC, C subunit, at 2,626,359 to 2,628,209
_2470
Dsui_2471: Dsui_2471 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 2,628,210 to 2,628,785
_2471
Dsui_2472: Dsui_2472 - tRNA-Gly, at 2,628,867 to 2,628,942
_2472
Dsui_2473: Dsui_2473 - tRNA-Cys, at 2,628,995 to 2,629,068
_2473
Dsui_2474: Dsui_2474 - tRNA-Gly, at 2,629,085 to 2,629,160
_2474
Dsui_2475: Dsui_2475 - tRNA-Gly, at 2,629,209 to 2,629,284
_2475
Position (kb)
2626
2627
2628
2629 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2625.701 kb on + strand at 2626.418 kb on + strand at 2626.537 kb on + strand at 2626.660 kb on + strand, within Dsui_2470 at 2626.700 kb on + strand, within Dsui_2470 at 2626.700 kb on + strand, within Dsui_2470 at 2626.708 kb on + strand, within Dsui_2470 at 2626.708 kb on - strand at 2626.711 kb on + strand, within Dsui_2470 at 2626.711 kb on + strand, within Dsui_2470 at 2626.711 kb on + strand, within Dsui_2470 at 2626.711 kb on + strand, within Dsui_2470 at 2626.711 kb on + strand, within Dsui_2470 at 2626.711 kb on + strand, within Dsui_2470 at 2626.843 kb on + strand, within Dsui_2470 at 2626.997 kb on + strand, within Dsui_2470 at 2627.093 kb on + strand, within Dsui_2470 at 2627.194 kb on + strand, within Dsui_2470 at 2627.225 kb on + strand, within Dsui_2470 at 2627.306 kb on + strand, within Dsui_2470 at 2627.438 kb on + strand, within Dsui_2470 at 2627.484 kb on + strand, within Dsui_2470 at 2627.541 kb on + strand, within Dsui_2470 at 2627.578 kb on + strand, within Dsui_2470 at 2627.704 kb on + strand, within Dsui_2470 at 2627.753 kb on + strand, within Dsui_2470 at 2627.772 kb on + strand, within Dsui_2470 at 2627.838 kb on + strand, within Dsui_2470 at 2627.882 kb on + strand, within Dsui_2470 at 2627.882 kb on + strand, within Dsui_2470 at 2627.901 kb on + strand, within Dsui_2470 at 2627.928 kb on - strand at 2627.957 kb on - strand, within Dsui_2470 at 2627.986 kb on + strand, within Dsui_2470 at 2628.090 kb on + strand at 2628.114 kb on + strand at 2628.135 kb on + strand at 2628.799 kb on + strand at 2628.800 kb on + strand at 2628.802 kb on - strand at 2628.807 kb on - strand at 2629.161 kb on + strand at 2629.175 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM remove 2,625,701 + -1.9 2,626,418 + -0.5 2,626,537 + -1.7 2,626,660 + Dsui_2470 0.16 -1.4 2,626,700 + Dsui_2470 0.18 -0.4 2,626,700 + Dsui_2470 0.18 -0.4 2,626,708 + Dsui_2470 0.19 -0.1 2,626,708 - +0.6 2,626,711 + Dsui_2470 0.19 -2.8 2,626,711 + Dsui_2470 0.19 +0.0 2,626,711 + Dsui_2470 0.19 -0.4 2,626,711 + Dsui_2470 0.19 -1.6 2,626,711 + Dsui_2470 0.19 -0.9 2,626,711 + Dsui_2470 0.19 +1.6 2,626,843 + Dsui_2470 0.26 -0.3 2,626,997 + Dsui_2470 0.34 -0.7 2,627,093 + Dsui_2470 0.40 +1.6 2,627,194 + Dsui_2470 0.45 -1.2 2,627,225 + Dsui_2470 0.47 -1.8 2,627,306 + Dsui_2470 0.51 -1.4 2,627,438 + Dsui_2470 0.58 -0.6 2,627,484 + Dsui_2470 0.61 -1.1 2,627,541 + Dsui_2470 0.64 -0.7 2,627,578 + Dsui_2470 0.66 -0.4 2,627,704 + Dsui_2470 0.73 -0.8 2,627,753 + Dsui_2470 0.75 -0.5 2,627,772 + Dsui_2470 0.76 -1.4 2,627,838 + Dsui_2470 0.80 -0.1 2,627,882 + Dsui_2470 0.82 -0.4 2,627,882 + Dsui_2470 0.82 -1.3 2,627,901 + Dsui_2470 0.83 +1.6 2,627,928 - -0.4 2,627,957 - Dsui_2470 0.86 +0.6 2,627,986 + Dsui_2470 0.88 -0.6 2,628,090 + -0.7 2,628,114 + -0.7 2,628,135 + -0.6 2,628,799 + -0.2 2,628,800 + -0.1 2,628,802 - -1.4 2,628,807 - -0.4 2,629,161 + -0.0 2,629,175 + -0.1
Or see this region's nucleotide sequence