Strain Fitness in Dechlorosoma suillum PS around Dsui_2470

Experiment: ALP with nitrate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2468 and Dsui_2469 are separated by 39 nucleotidesDsui_2469 and Dsui_2470 are separated by 7 nucleotidesDsui_2470 and Dsui_2471 are separated by 0 nucleotidesDsui_2471 and Dsui_2472 are separated by 81 nucleotidesDsui_2472 and Dsui_2473 are separated by 52 nucleotidesDsui_2473 and Dsui_2474 are separated by 16 nucleotidesDsui_2474 and Dsui_2475 are separated by 48 nucleotides Dsui_2468: Dsui_2468 - conserved hypothetical protein, PP_1857 family, at 2,624,450 to 2,625,649 _2468 Dsui_2469: Dsui_2469 - uracil-DNA glycosylase, at 2,625,689 to 2,626,351 _2469 Dsui_2470: Dsui_2470 - excinuclease ABC, C subunit, at 2,626,359 to 2,628,209 _2470 Dsui_2471: Dsui_2471 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 2,628,210 to 2,628,785 _2471 Dsui_2472: Dsui_2472 - tRNA-Gly, at 2,628,867 to 2,628,942 _2472 Dsui_2473: Dsui_2473 - tRNA-Cys, at 2,628,995 to 2,629,068 _2473 Dsui_2474: Dsui_2474 - tRNA-Gly, at 2,629,085 to 2,629,160 _2474 Dsui_2475: Dsui_2475 - tRNA-Gly, at 2,629,209 to 2,629,284 _2475 Position (kb) 2626 2627 2628 2629Strain fitness (log2 ratio) -3 -2 -1 0 1at 2625.701 kb on + strandat 2626.418 kb on + strandat 2626.537 kb on + strandat 2626.660 kb on + strand, within Dsui_2470at 2626.700 kb on + strand, within Dsui_2470at 2626.700 kb on + strand, within Dsui_2470at 2626.708 kb on + strand, within Dsui_2470at 2626.708 kb on - strandat 2626.711 kb on + strand, within Dsui_2470at 2626.711 kb on + strand, within Dsui_2470at 2626.711 kb on + strand, within Dsui_2470at 2626.711 kb on + strand, within Dsui_2470at 2626.711 kb on + strand, within Dsui_2470at 2626.711 kb on + strand, within Dsui_2470at 2626.843 kb on + strand, within Dsui_2470at 2626.997 kb on + strand, within Dsui_2470at 2627.093 kb on + strand, within Dsui_2470at 2627.194 kb on + strand, within Dsui_2470at 2627.225 kb on + strand, within Dsui_2470at 2627.306 kb on + strand, within Dsui_2470at 2627.438 kb on + strand, within Dsui_2470at 2627.484 kb on + strand, within Dsui_2470at 2627.541 kb on + strand, within Dsui_2470at 2627.578 kb on + strand, within Dsui_2470at 2627.704 kb on + strand, within Dsui_2470at 2627.753 kb on + strand, within Dsui_2470at 2627.772 kb on + strand, within Dsui_2470at 2627.838 kb on + strand, within Dsui_2470at 2627.882 kb on + strand, within Dsui_2470at 2627.882 kb on + strand, within Dsui_2470at 2627.901 kb on + strand, within Dsui_2470at 2627.928 kb on - strandat 2627.957 kb on - strand, within Dsui_2470at 2627.986 kb on + strand, within Dsui_2470at 2628.090 kb on + strandat 2628.114 kb on + strandat 2628.135 kb on + strandat 2628.799 kb on + strandat 2628.800 kb on + strandat 2628.802 kb on - strandat 2628.807 kb on - strandat 2629.161 kb on + strandat 2629.175 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM
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2,625,701 + -1.9
2,626,418 + -0.5
2,626,537 + -1.7
2,626,660 + Dsui_2470 0.16 -1.4
2,626,700 + Dsui_2470 0.18 -0.4
2,626,700 + Dsui_2470 0.18 -0.4
2,626,708 + Dsui_2470 0.19 -0.1
2,626,708 - +0.6
2,626,711 + Dsui_2470 0.19 -2.8
2,626,711 + Dsui_2470 0.19 +0.0
2,626,711 + Dsui_2470 0.19 -0.4
2,626,711 + Dsui_2470 0.19 -1.6
2,626,711 + Dsui_2470 0.19 -0.9
2,626,711 + Dsui_2470 0.19 +1.6
2,626,843 + Dsui_2470 0.26 -0.3
2,626,997 + Dsui_2470 0.34 -0.7
2,627,093 + Dsui_2470 0.40 +1.6
2,627,194 + Dsui_2470 0.45 -1.2
2,627,225 + Dsui_2470 0.47 -1.8
2,627,306 + Dsui_2470 0.51 -1.4
2,627,438 + Dsui_2470 0.58 -0.6
2,627,484 + Dsui_2470 0.61 -1.1
2,627,541 + Dsui_2470 0.64 -0.7
2,627,578 + Dsui_2470 0.66 -0.4
2,627,704 + Dsui_2470 0.73 -0.8
2,627,753 + Dsui_2470 0.75 -0.5
2,627,772 + Dsui_2470 0.76 -1.4
2,627,838 + Dsui_2470 0.80 -0.1
2,627,882 + Dsui_2470 0.82 -0.4
2,627,882 + Dsui_2470 0.82 -1.3
2,627,901 + Dsui_2470 0.83 +1.6
2,627,928 - -0.4
2,627,957 - Dsui_2470 0.86 +0.6
2,627,986 + Dsui_2470 0.88 -0.6
2,628,090 + -0.7
2,628,114 + -0.7
2,628,135 + -0.6
2,628,799 + -0.2
2,628,800 + -0.1
2,628,802 - -1.4
2,628,807 - -0.4
2,629,161 + -0.0
2,629,175 + -0.1

Or see this region's nucleotide sequence