Experiment: ALP with nitrate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2266 and Dsui_2267 are separated by 25 nucleotides Dsui_2267 and Dsui_2268 are separated by 466 nucleotides Dsui_2268 and Dsui_2269 are separated by 45 nucleotides
Dsui_2266: Dsui_2266 - nucleotidyltransferase/DNA polymerase involved in DNA repair, at 2,417,395 to 2,418,888
_2266
Dsui_2267: Dsui_2267 - hypothetical protein, at 2,418,914 to 2,419,648
_2267
Dsui_2268: Dsui_2268 - putative lactoylglutathione lyase, at 2,420,115 to 2,420,552
_2268
Dsui_2269: Dsui_2269 - SOS regulatory protein LexA, at 2,420,598 to 2,421,209
_2269
Position (kb)
2418
2419
2420 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2417.939 kb on - strand, within Dsui_2266 at 2418.218 kb on - strand at 2418.222 kb on + strand at 2418.224 kb on - strand, within Dsui_2266 at 2418.342 kb on - strand at 2418.348 kb on - strand at 2418.413 kb on - strand at 2418.619 kb on - strand at 2418.719 kb on - strand, within Dsui_2266 at 2419.517 kb on + strand at 2419.522 kb on + strand at 2419.620 kb on - strand at 2419.659 kb on + strand at 2419.850 kb on - strand at 2419.855 kb on + strand at 2419.863 kb on - strand at 2419.972 kb on - strand at 2419.979 kb on - strand at 2420.007 kb on - strand at 2420.177 kb on + strand at 2420.234 kb on - strand, within Dsui_2268 at 2420.269 kb on + strand at 2420.269 kb on + strand at 2420.269 kb on + strand at 2420.277 kb on - strand, within Dsui_2268 at 2420.277 kb on - strand, within Dsui_2268 at 2420.342 kb on + strand at 2420.411 kb on + strand at 2420.424 kb on - strand, within Dsui_2268 at 2420.469 kb on + strand at 2420.530 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM remove 2,417,939 - Dsui_2266 0.36 -0.8 2,418,218 - -0.2 2,418,222 + +0.8 2,418,224 - Dsui_2266 0.55 -0.2 2,418,342 - -0.2 2,418,348 - -0.2 2,418,413 - +0.8 2,418,619 - +0.8 2,418,719 - Dsui_2266 0.89 -0.2 2,419,517 + -0.8 2,419,522 + +0.8 2,419,620 - -1.2 2,419,659 + -0.8 2,419,850 - -0.8 2,419,855 + +0.8 2,419,863 - +0.8 2,419,972 - -1.2 2,419,979 - -0.2 2,420,007 - +0.8 2,420,177 + -1.2 2,420,234 - Dsui_2268 0.27 -0.8 2,420,269 + +0.8 2,420,269 + -0.8 2,420,269 + -0.2 2,420,277 - Dsui_2268 0.37 -0.2 2,420,277 - Dsui_2268 0.37 -0.2 2,420,342 + +0.8 2,420,411 + +0.8 2,420,424 - Dsui_2268 0.71 -2.8 2,420,469 + +0.8 2,420,530 - +0.6
Or see this region's nucleotide sequence