Strain Fitness in Dechlorosoma suillum PS around Dsui_2182

Experiment: ALP with nitrate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2181 and Dsui_2182 are separated by 218 nucleotidesDsui_2182 and Dsui_2183 are separated by 240 nucleotides Dsui_2181: Dsui_2181 - DNA-binding domain-containing protein, AraC-type, at 2,316,198 to 2,316,983 _2181 Dsui_2182: Dsui_2182 - arabinose efflux permease family protein, at 2,317,202 to 2,318,506 _2182 Dsui_2183: Dsui_2183 - aldose 1-epimerase-like enzyme, at 2,318,747 to 2,319,619 _2183 Position (kb) 2317 2318 2319Strain fitness (log2 ratio) -1 0 1at 2316.278 kb on - strand, within Dsui_2181at 2316.475 kb on - strand, within Dsui_2181at 2316.486 kb on - strand, within Dsui_2181at 2316.535 kb on + strandat 2316.580 kb on - strand, within Dsui_2181at 2316.742 kb on + strandat 2316.790 kb on + strand, within Dsui_2181at 2316.818 kb on - strand, within Dsui_2181at 2316.837 kb on - strandat 2316.853 kb on - strand, within Dsui_2181at 2316.854 kb on + strandat 2317.207 kb on - strandat 2317.296 kb on + strandat 2317.455 kb on - strandat 2317.543 kb on + strandat 2317.592 kb on + strand, within Dsui_2182at 2317.706 kb on + strandat 2317.957 kb on - strandat 2318.032 kb on + strand, within Dsui_2182at 2318.042 kb on - strandat 2318.084 kb on - strandat 2318.156 kb on + strand, within Dsui_2182at 2318.284 kb on - strandat 2318.595 kb on + strandat 2318.605 kb on + strandat 2318.768 kb on + strandat 2318.823 kb on + strandat 2318.948 kb on + strandat 2319.343 kb on + strandat 2319.369 kb on - strand, within Dsui_2183at 2319.402 kb on - strand, within Dsui_2183

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM
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2,316,278 - Dsui_2181 0.10 +1.0
2,316,475 - Dsui_2181 0.35 +0.3
2,316,486 - Dsui_2181 0.37 +0.2
2,316,535 + +1.0
2,316,580 - Dsui_2181 0.49 -0.7
2,316,742 + -0.0
2,316,790 + Dsui_2181 0.75 -1.0
2,316,818 - Dsui_2181 0.79 +0.4
2,316,837 - -0.0
2,316,853 - Dsui_2181 0.83 -0.1
2,316,854 + +1.0
2,317,207 - -0.6
2,317,296 + -0.0
2,317,455 - +1.0
2,317,543 + -0.0
2,317,592 + Dsui_2182 0.30 +1.0
2,317,706 + +1.0
2,317,957 - -0.0
2,318,032 + Dsui_2182 0.64 -1.0
2,318,042 - -0.0
2,318,084 - -0.0
2,318,156 + Dsui_2182 0.73 -1.3
2,318,284 - +1.0
2,318,595 + +1.0
2,318,605 + +1.0
2,318,768 + -0.6
2,318,823 + +1.0
2,318,948 + -1.3
2,319,343 + +1.0
2,319,369 - Dsui_2183 0.71 +0.4
2,319,402 - Dsui_2183 0.75 -0.8

Or see this region's nucleotide sequence