Experiment: ALP with nitrate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2176 and Dsui_2177 are separated by 89 nucleotides Dsui_2177 and Dsui_2178 are separated by 67 nucleotides Dsui_2178 and Dsui_2179 are separated by 34 nucleotides
Dsui_2176: Dsui_2176 - putative esterase of the alpha-beta hydrolase superfamily, at 2,312,502 to 2,313,542
_2176
Dsui_2177: Dsui_2177 - methyltransferase family protein, at 2,313,632 to 2,314,270
_2177
Dsui_2178: Dsui_2178 - hypothetical protein, at 2,314,338 to 2,315,144
_2178
Dsui_2179: Dsui_2179 - conserved protein of DIM6/NTAB family, at 2,315,179 to 2,315,745
_2179
Position (kb)
2313
2314
2315 Strain fitness (log2 ratio)
-1
0
1 at 2312.701 kb on - strand at 2312.701 kb on - strand, within Dsui_2176 at 2312.748 kb on + strand, within Dsui_2176 at 2312.774 kb on + strand, within Dsui_2176 at 2312.779 kb on + strand, within Dsui_2176 at 2312.800 kb on + strand, within Dsui_2176 at 2312.936 kb on + strand at 2313.083 kb on + strand, within Dsui_2176 at 2313.213 kb on - strand, within Dsui_2176 at 2313.217 kb on + strand, within Dsui_2176 at 2313.229 kb on + strand, within Dsui_2176 at 2313.351 kb on + strand, within Dsui_2176 at 2313.444 kb on + strand at 2313.493 kb on + strand at 2313.578 kb on + strand at 2313.608 kb on + strand at 2313.663 kb on - strand at 2313.682 kb on - strand at 2313.685 kb on + strand at 2313.713 kb on - strand at 2313.786 kb on + strand, within Dsui_2177 at 2313.904 kb on + strand, within Dsui_2177 at 2313.951 kb on - strand at 2314.012 kb on + strand, within Dsui_2177 at 2314.120 kb on - strand, within Dsui_2177 at 2314.167 kb on + strand at 2314.243 kb on - strand at 2314.371 kb on + strand at 2314.429 kb on + strand, within Dsui_2178 at 2314.523 kb on - strand, within Dsui_2178 at 2314.561 kb on + strand, within Dsui_2178 at 2314.583 kb on + strand, within Dsui_2178 at 2314.826 kb on + strand, within Dsui_2178 at 2314.852 kb on + strand at 2314.857 kb on - strand at 2315.096 kb on + strand at 2315.214 kb on - strand at 2315.254 kb on + strand, within Dsui_2179
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM remove 2,312,701 - +1.0 2,312,701 - Dsui_2176 0.19 -0.0 2,312,748 + Dsui_2176 0.24 +1.0 2,312,774 + Dsui_2176 0.26 +1.0 2,312,779 + Dsui_2176 0.27 -0.0 2,312,800 + Dsui_2176 0.29 -0.6 2,312,936 + +1.0 2,313,083 + Dsui_2176 0.56 -0.6 2,313,213 - Dsui_2176 0.68 +1.0 2,313,217 + Dsui_2176 0.69 +1.0 2,313,229 + Dsui_2176 0.70 +1.0 2,313,351 + Dsui_2176 0.82 +1.0 2,313,444 + +1.0 2,313,493 + -0.0 2,313,578 + -0.6 2,313,608 + -1.0 2,313,663 - -0.6 2,313,682 - +1.0 2,313,685 + -0.5 2,313,713 - +1.0 2,313,786 + Dsui_2177 0.24 +0.7 2,313,904 + Dsui_2177 0.43 -1.6 2,313,951 - +1.0 2,314,012 + Dsui_2177 0.59 +0.5 2,314,120 - Dsui_2177 0.76 +1.0 2,314,167 + +0.4 2,314,243 - -0.6 2,314,371 + -0.6 2,314,429 + Dsui_2178 0.11 -1.6 2,314,523 - Dsui_2178 0.23 -0.6 2,314,561 + Dsui_2178 0.28 -0.0 2,314,583 + Dsui_2178 0.30 -0.6 2,314,826 + Dsui_2178 0.60 -1.3 2,314,852 + +1.0 2,314,857 - -0.6 2,315,096 + -0.0 2,315,214 - -1.3 2,315,254 + Dsui_2179 0.13 +1.0
Or see this region's nucleotide sequence