Experiment: ALP with nitrate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2095 and Dsui_2096 are separated by 286 nucleotides Dsui_2096 and Dsui_2097 are separated by 131 nucleotides
Dsui_2095: Dsui_2095 - methylase involved in ubiquinone/menaquinone biosynthesis, at 2,219,486 to 2,220,172
_2095
Dsui_2096: Dsui_2096 - methyl-accepting chemotaxis protein, at 2,220,459 to 2,222,066
_2096
Dsui_2097: Dsui_2097 - putative phosphohydrolase, at 2,222,198 to 2,223,391
_2097
Position (kb)
2220
2221
2222
2223 Strain fitness (log2 ratio)
-2
-1
0
1 at 2219.491 kb on + strand at 2219.491 kb on + strand at 2219.533 kb on + strand at 2219.671 kb on - strand at 2219.778 kb on + strand, within Dsui_2095 at 2219.782 kb on + strand, within Dsui_2095 at 2219.946 kb on + strand at 2220.064 kb on - strand at 2220.161 kb on + strand at 2220.211 kb on + strand at 2220.316 kb on - strand at 2220.431 kb on - strand at 2220.451 kb on - strand at 2220.484 kb on + strand at 2220.676 kb on - strand, within Dsui_2096 at 2220.712 kb on + strand, within Dsui_2096 at 2220.734 kb on + strand, within Dsui_2096 at 2220.741 kb on + strand at 2220.772 kb on + strand, within Dsui_2096 at 2220.869 kb on + strand, within Dsui_2096 at 2220.931 kb on - strand, within Dsui_2096 at 2220.987 kb on + strand, within Dsui_2096 at 2221.080 kb on + strand, within Dsui_2096 at 2221.133 kb on + strand, within Dsui_2096 at 2221.165 kb on + strand, within Dsui_2096 at 2221.247 kb on + strand, within Dsui_2096 at 2221.247 kb on + strand, within Dsui_2096 at 2221.254 kb on - strand, within Dsui_2096 at 2221.255 kb on - strand, within Dsui_2096 at 2221.322 kb on + strand, within Dsui_2096 at 2221.351 kb on + strand, within Dsui_2096 at 2221.701 kb on + strand, within Dsui_2096 at 2221.818 kb on + strand, within Dsui_2096 at 2222.257 kb on + strand at 2222.282 kb on + strand at 2222.366 kb on - strand, within Dsui_2097 at 2222.371 kb on - strand, within Dsui_2097 at 2222.443 kb on - strand, within Dsui_2097 at 2222.504 kb on + strand, within Dsui_2097 at 2222.629 kb on + strand at 2222.634 kb on + strand, within Dsui_2097 at 2222.642 kb on - strand at 2222.710 kb on - strand, within Dsui_2097 at 2222.928 kb on + strand at 2222.935 kb on - strand, within Dsui_2097
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM remove 2,219,491 + +1.0 2,219,491 + +1.0 2,219,533 + -2.3 2,219,671 - -0.6 2,219,778 + Dsui_2095 0.43 -1.8 2,219,782 + Dsui_2095 0.43 -1.0 2,219,946 + +1.0 2,220,064 - +1.0 2,220,161 + +1.0 2,220,211 + -2.5 2,220,316 - +1.0 2,220,431 - -0.0 2,220,451 - +1.0 2,220,484 + -0.0 2,220,676 - Dsui_2096 0.13 -0.0 2,220,712 + Dsui_2096 0.16 +1.0 2,220,734 + Dsui_2096 0.17 -0.6 2,220,741 + -0.0 2,220,772 + Dsui_2096 0.19 -0.3 2,220,869 + Dsui_2096 0.25 +1.0 2,220,931 - Dsui_2096 0.29 -0.0 2,220,987 + Dsui_2096 0.33 -1.0 2,221,080 + Dsui_2096 0.39 -0.0 2,221,133 + Dsui_2096 0.42 -1.0 2,221,165 + Dsui_2096 0.44 -0.0 2,221,247 + Dsui_2096 0.49 -0.6 2,221,247 + Dsui_2096 0.49 -1.8 2,221,254 - Dsui_2096 0.49 -0.0 2,221,255 - Dsui_2096 0.50 +1.0 2,221,322 + Dsui_2096 0.54 +1.0 2,221,351 + Dsui_2096 0.55 -0.3 2,221,701 + Dsui_2096 0.77 -1.0 2,221,818 + Dsui_2096 0.85 -0.4 2,222,257 + -0.0 2,222,282 + +1.0 2,222,366 - Dsui_2097 0.14 -0.0 2,222,371 - Dsui_2097 0.14 +1.0 2,222,443 - Dsui_2097 0.21 -0.0 2,222,504 + Dsui_2097 0.26 -0.0 2,222,629 + -0.0 2,222,634 + Dsui_2097 0.37 -1.6 2,222,642 - +1.0 2,222,710 - Dsui_2097 0.43 -0.6 2,222,928 + +1.0 2,222,935 - Dsui_2097 0.62 +1.0
Or see this region's nucleotide sequence