Experiment: ALP with nitrate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1861 and Dsui_1862 are separated by 15 nucleotides Dsui_1862 and Dsui_1863 are separated by 191 nucleotides Dsui_1863 and Dsui_1864 are separated by 41 nucleotides
Dsui_1861: Dsui_1861 - HPt domain-containing protein, at 1,955,507 to 1,955,905
_1861
Dsui_1862: Dsui_1862 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 1,955,921 to 1,956,574
_1862
Dsui_1863: Dsui_1863 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 1,956,766 to 1,957,806
_1863
Dsui_1864: Dsui_1864 - hypothetical protein, at 1,957,848 to 1,959,011
_1864
Position (kb)
1956
1957
1958 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1955.899 kb on + strand at 1955.985 kb on - strand at 1956.212 kb on - strand, within Dsui_1862 at 1956.282 kb on + strand, within Dsui_1862 at 1956.314 kb on - strand, within Dsui_1862 at 1956.387 kb on - strand, within Dsui_1862 at 1956.497 kb on - strand, within Dsui_1862 at 1956.497 kb on - strand, within Dsui_1862 at 1956.695 kb on - strand at 1956.806 kb on + strand at 1956.819 kb on - strand at 1956.880 kb on + strand, within Dsui_1863 at 1956.958 kb on - strand at 1957.026 kb on + strand, within Dsui_1863 at 1957.057 kb on - strand at 1957.280 kb on + strand, within Dsui_1863 at 1957.280 kb on + strand, within Dsui_1863 at 1957.424 kb on - strand at 1957.424 kb on - strand at 1957.476 kb on + strand, within Dsui_1863 at 1957.671 kb on + strand, within Dsui_1863 at 1957.671 kb on + strand at 1957.801 kb on + strand at 1957.857 kb on + strand at 1957.890 kb on + strand at 1957.903 kb on - strand at 1958.000 kb on - strand, within Dsui_1864 at 1958.133 kb on + strand, within Dsui_1864 at 1958.174 kb on + strand, within Dsui_1864 at 1958.277 kb on + strand, within Dsui_1864 at 1958.357 kb on + strand at 1958.369 kb on + strand, within Dsui_1864 at 1958.412 kb on - strand at 1958.450 kb on - strand at 1958.511 kb on + strand, within Dsui_1864 at 1958.519 kb on - strand at 1958.616 kb on + strand, within Dsui_1864 at 1958.649 kb on + strand, within Dsui_1864 at 1958.667 kb on - strand at 1958.696 kb on + strand, within Dsui_1864 at 1958.704 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM remove 1,955,899 + -1.3 1,955,985 - +0.1 1,956,212 - Dsui_1862 0.44 -0.3 1,956,282 + Dsui_1862 0.55 -0.3 1,956,314 - Dsui_1862 0.60 +0.2 1,956,387 - Dsui_1862 0.71 +0.3 1,956,497 - Dsui_1862 0.88 +0.0 1,956,497 - Dsui_1862 0.88 -0.3 1,956,695 - -1.3 1,956,806 + -0.9 1,956,819 - +0.7 1,956,880 + Dsui_1863 0.11 -2.8 1,956,958 - +0.7 1,957,026 + Dsui_1863 0.25 -1.6 1,957,057 - +0.7 1,957,280 + Dsui_1863 0.49 -0.3 1,957,280 + Dsui_1863 0.49 +0.7 1,957,424 - -0.3 1,957,424 - -0.3 1,957,476 + Dsui_1863 0.68 +0.7 1,957,671 + Dsui_1863 0.87 -0.6 1,957,671 + +0.7 1,957,801 + -0.3 1,957,857 + +0.7 1,957,890 + +0.8 1,957,903 - +0.8 1,958,000 - Dsui_1864 0.13 +0.8 1,958,133 + Dsui_1864 0.24 -1.8 1,958,174 + Dsui_1864 0.28 -1.4 1,958,277 + Dsui_1864 0.37 -2.8 1,958,357 + +0.8 1,958,369 + Dsui_1864 0.45 -0.8 1,958,412 - -0.2 1,958,450 - +0.8 1,958,511 + Dsui_1864 0.57 +0.8 1,958,519 - +0.8 1,958,616 + Dsui_1864 0.66 -0.2 1,958,649 + Dsui_1864 0.69 -1.2 1,958,667 - +0.8 1,958,696 + Dsui_1864 0.73 -0.8 1,958,704 - +0.8
Or see this region's nucleotide sequence