Experiment: ALP with nitrate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1846 and Dsui_1847 are separated by 61 nucleotides Dsui_1847 and Dsui_1848 overlap by 17 nucleotides Dsui_1848 and Dsui_1849 are separated by 51 nucleotides Dsui_1849 and Dsui_1850 are separated by 3 nucleotides
Dsui_1846: Dsui_1846 - outer membrane phospholipase A, at 1,941,462 to 1,942,622
_1846
Dsui_1847: Dsui_1847 - acetyltransferase, N-acetylglutamate synthase, at 1,942,684 to 1,943,136
_1847
Dsui_1848: Dsui_1848 - arsenical-resistance protein, at 1,943,120 to 1,944,175
_1848
Dsui_1849: Dsui_1849 - protein-tyrosine-phosphatase, at 1,944,227 to 1,944,706
_1849
Dsui_1850: Dsui_1850 - putative transcriptional regulator, at 1,944,710 to 1,945,093
_1850
Position (kb) 1943
1944
1945 Strain fitness (log2 ratio) -2
-1
0
1 at 1942.131 kb on + strand, within Dsui_1846 at 1942.162 kb on - strand, within Dsui_1846 at 1942.309 kb on - strand, within Dsui_1846 at 1942.336 kb on + strand, within Dsui_1846 at 1942.391 kb on + strand at 1942.816 kb on + strand at 1942.897 kb on - strand, within Dsui_1847 at 1942.903 kb on - strand at 1942.942 kb on + strand, within Dsui_1847 at 1943.031 kb on + strand at 1943.058 kb on + strand at 1943.058 kb on + strand at 1943.066 kb on - strand, within Dsui_1847 at 1943.097 kb on - strand at 1943.136 kb on + strand at 1943.213 kb on + strand at 1943.299 kb on - strand, within Dsui_1848 at 1943.463 kb on - strand at 1943.608 kb on + strand at 1943.621 kb on - strand at 1943.690 kb on - strand at 1943.695 kb on - strand at 1943.820 kb on + strand at 1943.835 kb on - strand at 1943.974 kb on + strand, within Dsui_1848 at 1943.982 kb on - strand, within Dsui_1848 at 1943.982 kb on - strand, within Dsui_1848 at 1944.109 kb on + strand at 1944.145 kb on - strand at 1944.203 kb on - strand at 1944.225 kb on + strand at 1944.238 kb on - strand at 1944.239 kb on - strand at 1944.261 kb on + strand at 1944.261 kb on + strand at 1944.269 kb on - strand at 1944.648 kb on - strand, within Dsui_1849 at 1944.716 kb on - strand at 1944.793 kb on - strand, within Dsui_1850 at 1944.902 kb on - strand, within Dsui_1850 at 1944.925 kb on - strand, within Dsui_1850 at 1944.941 kb on + strand, within Dsui_1850 at 1944.945 kb on - strand, within Dsui_1850 at 1944.964 kb on + strand at 1944.964 kb on + strand, within Dsui_1850 at 1944.972 kb on - strand, within Dsui_1850
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM remove 1,942,131 + Dsui_1846 0.58 -1.7 1,942,162 - Dsui_1846 0.60 +0.5 1,942,309 - Dsui_1846 0.73 -1.8 1,942,336 + Dsui_1846 0.75 +0.6 1,942,391 + -1.4 1,942,816 + +0.6 1,942,897 - Dsui_1847 0.47 -1.4 1,942,903 - +0.6 1,942,942 + Dsui_1847 0.57 -0.4 1,943,031 + +0.6 1,943,058 + +0.6 1,943,058 + +0.6 1,943,066 - Dsui_1847 0.84 -0.9 1,943,097 - +0.6 1,943,136 + +0.6 1,943,213 + -0.4 1,943,299 - Dsui_1848 0.17 -0.4 1,943,463 - +0.6 1,943,608 + +0.6 1,943,621 - -0.4 1,943,690 - -0.4 1,943,695 - +0.6 1,943,820 + -0.4 1,943,835 - -0.4 1,943,974 + Dsui_1848 0.81 +0.6 1,943,982 - Dsui_1848 0.82 -0.4 1,943,982 - Dsui_1848 0.82 -0.4 1,944,109 + -0.4 1,944,145 - +0.6 1,944,203 - -1.4 1,944,225 + -0.4 1,944,238 - +0.6 1,944,239 - -1.4 1,944,261 + +0.6 1,944,261 + +0.6 1,944,269 - +0.6 1,944,648 - Dsui_1849 0.88 +0.6 1,944,716 - +0.6 1,944,793 - Dsui_1850 0.22 -0.3 1,944,902 - Dsui_1850 0.50 +0.2 1,944,925 - Dsui_1850 0.56 -0.0 1,944,941 + Dsui_1850 0.60 -1.4 1,944,945 - Dsui_1850 0.61 -0.1 1,944,964 + +0.6 1,944,964 + Dsui_1850 0.66 +0.6 1,944,972 - Dsui_1850 0.68 -0.1
Or see this region's nucleotide sequence