Experiment: ALP with nitrate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1837 and Dsui_1838 are separated by 1 nucleotides Dsui_1838 and Dsui_1839 are separated by 81 nucleotides Dsui_1839 and Dsui_1840 are separated by 11 nucleotides Dsui_1840 and Dsui_1841 are separated by 66 nucleotides Dsui_1841 and Dsui_1842 are separated by 10 nucleotides
Dsui_1837: Dsui_1837 - cation/cationic drug transporter, at 1,936,137 to 1,936,463
_1837
Dsui_1838: Dsui_1838 - spermidine synthase, at 1,936,465 to 1,937,229
_1838
Dsui_1839: Dsui_1839 - hypothetical protein, at 1,937,311 to 1,937,706
_1839
Dsui_1840: Dsui_1840 - hypothetical protein, at 1,937,718 to 1,937,912
_1840
Dsui_1841: Dsui_1841 - hypothetical protein, at 1,937,979 to 1,938,401
_1841
Dsui_1842: Dsui_1842 - hypothetical protein, at 1,938,412 to 1,938,594
_1842
Position (kb) 1937
1938 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1936.353 kb on + strand, within Dsui_1837 at 1936.361 kb on + strand, within Dsui_1837 at 1936.361 kb on + strand at 1936.383 kb on + strand, within Dsui_1837 at 1936.664 kb on - strand, within Dsui_1838 at 1936.712 kb on - strand, within Dsui_1838 at 1936.756 kb on - strand, within Dsui_1838 at 1936.758 kb on + strand, within Dsui_1838 at 1936.758 kb on + strand, within Dsui_1838 at 1936.848 kb on + strand, within Dsui_1838 at 1936.989 kb on - strand, within Dsui_1838 at 1937.110 kb on - strand, within Dsui_1838 at 1937.112 kb on + strand, within Dsui_1838 at 1937.147 kb on + strand, within Dsui_1838 at 1937.223 kb on - strand at 1937.224 kb on + strand at 1937.243 kb on + strand at 1937.251 kb on - strand at 1937.266 kb on - strand at 1937.345 kb on + strand at 1937.353 kb on - strand, within Dsui_1839 at 1937.358 kb on - strand, within Dsui_1839 at 1937.466 kb on - strand, within Dsui_1839 at 1937.620 kb on - strand, within Dsui_1839 at 1937.667 kb on + strand at 1937.760 kb on + strand, within Dsui_1840 at 1937.760 kb on + strand, within Dsui_1840 at 1937.770 kb on + strand, within Dsui_1840 at 1937.778 kb on - strand, within Dsui_1840 at 1937.779 kb on + strand, within Dsui_1840 at 1937.862 kb on - strand, within Dsui_1840 at 1937.873 kb on - strand, within Dsui_1840 at 1937.875 kb on + strand, within Dsui_1840 at 1937.907 kb on + strand at 1937.909 kb on + strand at 1937.941 kb on + strand at 1937.986 kb on + strand at 1938.000 kb on + strand at 1938.040 kb on - strand, within Dsui_1841 at 1938.076 kb on - strand at 1938.129 kb on + strand, within Dsui_1841 at 1938.277 kb on - strand, within Dsui_1841 at 1938.324 kb on - strand at 1938.334 kb on - strand, within Dsui_1841 at 1938.352 kb on + strand, within Dsui_1841 at 1938.560 kb on - strand, within Dsui_1842 at 1938.577 kb on + strand at 1938.580 kb on - strand at 1938.601 kb on + strand at 1938.601 kb on + strand at 1938.601 kb on + strand at 1938.609 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM remove 1,936,353 + Dsui_1837 0.66 +0.6 1,936,361 + Dsui_1837 0.69 -1.7 1,936,361 + +0.6 1,936,383 + Dsui_1837 0.75 -1.0 1,936,664 - Dsui_1838 0.26 +0.6 1,936,712 - Dsui_1838 0.32 +0.2 1,936,756 - Dsui_1838 0.38 +0.1 1,936,758 + Dsui_1838 0.38 -2.2 1,936,758 + Dsui_1838 0.38 -1.4 1,936,848 + Dsui_1838 0.50 -1.0 1,936,989 - Dsui_1838 0.68 -0.2 1,937,110 - Dsui_1838 0.84 -1.2 1,937,112 + Dsui_1838 0.85 -0.4 1,937,147 + Dsui_1838 0.89 -1.4 1,937,223 - -0.3 1,937,224 + +0.6 1,937,243 + -1.0 1,937,251 - -0.1 1,937,266 - -0.9 1,937,345 + +0.6 1,937,353 - Dsui_1839 0.11 -1.7 1,937,358 - Dsui_1839 0.12 -2.0 1,937,466 - Dsui_1839 0.39 -1.0 1,937,620 - Dsui_1839 0.78 +0.6 1,937,667 + -1.0 1,937,760 + Dsui_1840 0.22 +0.6 1,937,760 + Dsui_1840 0.22 -0.4 1,937,770 + Dsui_1840 0.27 -3.1 1,937,778 - Dsui_1840 0.31 +0.6 1,937,779 + Dsui_1840 0.31 +0.6 1,937,862 - Dsui_1840 0.74 +0.6 1,937,873 - Dsui_1840 0.79 -1.0 1,937,875 + Dsui_1840 0.81 -0.4 1,937,907 + +0.6 1,937,909 + +0.6 1,937,941 + -0.4 1,937,986 + +0.6 1,938,000 + -0.4 1,938,040 - Dsui_1841 0.14 -1.0 1,938,076 - -0.4 1,938,129 + Dsui_1841 0.35 -2.0 1,938,277 - Dsui_1841 0.70 +0.6 1,938,324 - -1.4 1,938,334 - Dsui_1841 0.84 -1.0 1,938,352 + Dsui_1841 0.88 +0.6 1,938,560 - Dsui_1842 0.81 -1.0 1,938,577 + -0.4 1,938,580 - -0.4 1,938,601 + +0.6 1,938,601 + +0.6 1,938,601 + -1.4 1,938,609 - -0.4
Or see this region's nucleotide sequence