Strain Fitness in Dechlorosoma suillum PS around Dsui_1830

Experiment: ALP with nitrate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1828 and Dsui_1829 are separated by 122 nucleotidesDsui_1829 and Dsui_1830 are separated by 45 nucleotidesDsui_1830 and Dsui_1831 are separated by 520 nucleotides Dsui_1828: Dsui_1828 - response regulator with putative antiterminator output domain, at 1,927,566 to 1,928,141 _1828 Dsui_1829: Dsui_1829 - hemerythrin HHE cation binding domain-containing protein, at 1,928,264 to 1,928,659 _1829 Dsui_1830: Dsui_1830 - Yip1 domain protein, at 1,928,705 to 1,929,304 _1830 Dsui_1831: Dsui_1831 - ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component, at 1,929,825 to 1,931,102 _1831 Position (kb) 1928 1929 1930Strain fitness (log2 ratio) -2 -1 0 1at 1927.732 kb on + strand, within Dsui_1828at 1927.873 kb on + strand, within Dsui_1828at 1927.881 kb on - strand, within Dsui_1828at 1927.941 kb on - strand, within Dsui_1828at 1927.941 kb on - strand, within Dsui_1828at 1928.008 kb on - strand, within Dsui_1828at 1928.008 kb on - strandat 1928.008 kb on - strand, within Dsui_1828at 1928.047 kb on - strandat 1928.055 kb on + strand, within Dsui_1828at 1928.167 kb on + strandat 1928.238 kb on + strandat 1928.247 kb on - strandat 1928.313 kb on + strand, within Dsui_1829at 1928.502 kb on - strand, within Dsui_1829at 1928.574 kb on + strand, within Dsui_1829at 1928.579 kb on + strand, within Dsui_1829at 1928.579 kb on + strand, within Dsui_1829at 1928.710 kb on - strandat 1928.758 kb on + strandat 1928.843 kb on + strand, within Dsui_1830at 1928.929 kb on + strand, within Dsui_1830at 1928.931 kb on - strand, within Dsui_1830at 1929.010 kb on - strandat 1929.232 kb on - strand, within Dsui_1830at 1929.274 kb on + strandat 1929.292 kb on + strandat 1929.347 kb on + strandat 1929.501 kb on + strandat 1929.516 kb on + strandat 1929.550 kb on + strandat 1929.648 kb on + strandat 1929.685 kb on + strandat 1929.713 kb on - strandat 1929.720 kb on + strandat 1929.728 kb on - strandat 1929.728 kb on - strandat 1929.809 kb on + strandat 1930.165 kb on + strand, within Dsui_1831at 1930.169 kb on + strand, within Dsui_1831at 1930.169 kb on + strandat 1930.248 kb on + strand, within Dsui_1831at 1930.248 kb on + strand, within Dsui_1831at 1930.274 kb on + strand, within Dsui_1831at 1930.274 kb on + strand, within Dsui_1831at 1930.299 kb on + strand, within Dsui_1831at 1930.304 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM
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1,927,732 + Dsui_1828 0.29 -0.3
1,927,873 + Dsui_1828 0.53 -0.3
1,927,881 - Dsui_1828 0.55 +0.6
1,927,941 - Dsui_1828 0.65 -1.0
1,927,941 - Dsui_1828 0.65 -0.4
1,928,008 - Dsui_1828 0.77 -0.4
1,928,008 - +0.6
1,928,008 - Dsui_1828 0.77 +0.6
1,928,047 - +0.6
1,928,055 + Dsui_1828 0.85 +0.3
1,928,167 + -0.2
1,928,238 + -0.2
1,928,247 - -0.4
1,928,313 + Dsui_1829 0.12 -1.2
1,928,502 - Dsui_1829 0.60 -1.4
1,928,574 + Dsui_1829 0.78 -1.4
1,928,579 + Dsui_1829 0.80 -0.6
1,928,579 + Dsui_1829 0.80 -2.0
1,928,710 - +0.6
1,928,758 + +0.1
1,928,843 + Dsui_1830 0.23 +0.6
1,928,929 + Dsui_1830 0.37 -0.4
1,928,931 - Dsui_1830 0.38 -1.0
1,929,010 - +1.6
1,929,232 - Dsui_1830 0.88 -1.0
1,929,274 + +0.6
1,929,292 + +0.6
1,929,347 + -1.4
1,929,501 + -0.4
1,929,516 + -0.4
1,929,550 + +0.6
1,929,648 + +0.6
1,929,685 + +0.6
1,929,713 - -1.4
1,929,720 + -1.4
1,929,728 - +0.6
1,929,728 - -0.4
1,929,809 + -1.0
1,930,165 + Dsui_1831 0.27 -1.0
1,930,169 + Dsui_1831 0.27 -1.0
1,930,169 + -0.4
1,930,248 + Dsui_1831 0.33 -2.6
1,930,248 + Dsui_1831 0.33 +0.6
1,930,274 + Dsui_1831 0.35 +0.6
1,930,274 + Dsui_1831 0.35 -2.2
1,930,299 + Dsui_1831 0.37 -1.0
1,930,304 + +0.6

Or see this region's nucleotide sequence