Strain Fitness in Dechlorosoma suillum PS around Dsui_1600

Experiment: ALP with nitrate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1599 and Dsui_1600 overlap by 4 nucleotidesDsui_1600 and Dsui_1601 are separated by 27 nucleotidesDsui_1601 and Dsui_1602 are separated by 142 nucleotides Dsui_1599: Dsui_1599 - putative enzyme of heme biosynthesis, at 1,679,632 to 1,680,834 _1599 Dsui_1600: Dsui_1600 - putative enzyme of heme biosynthesis, at 1,680,831 to 1,681,916 _1600 Dsui_1601: Dsui_1601 - uroporphyrinogen-III synthase, at 1,681,944 to 1,682,711 _1601 Dsui_1602: Dsui_1602 - porphobilinogen deaminase, at 1,682,854 to 1,683,813 _1602 Position (kb) 1680 1681 1682Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1680.002 kb on + strand, within Dsui_1599at 1680.010 kb on - strand, within Dsui_1599at 1680.102 kb on + strand, within Dsui_1599at 1680.251 kb on + strand, within Dsui_1599at 1680.366 kb on + strand, within Dsui_1599at 1680.389 kb on - strand, within Dsui_1599at 1680.394 kb on + strand, within Dsui_1599at 1680.584 kb on + strand, within Dsui_1599at 1680.592 kb on - strand, within Dsui_1599at 1680.769 kb on - strandat 1680.849 kb on - strandat 1680.851 kb on + strandat 1680.859 kb on - strandat 1680.861 kb on + strandat 1680.868 kb on + strandat 1681.078 kb on - strand, within Dsui_1600at 1681.090 kb on + strand, within Dsui_1600at 1681.113 kb on - strand, within Dsui_1600at 1681.131 kb on + strandat 1681.189 kb on - strand, within Dsui_1600at 1681.386 kb on - strand, within Dsui_1600at 1681.471 kb on + strand, within Dsui_1600at 1681.504 kb on - strand, within Dsui_1600at 1681.504 kb on - strand, within Dsui_1600at 1681.513 kb on + strandat 1681.518 kb on + strandat 1681.656 kb on - strand, within Dsui_1600at 1681.783 kb on - strand, within Dsui_1600at 1681.890 kb on - strandat 1681.919 kb on - strandat 1681.930 kb on - strandat 1682.738 kb on + strandat 1682.762 kb on + strandat 1682.774 kb on - strandat 1682.779 kb on + strandat 1682.846 kb on - strandat 1682.859 kb on + strandat 1682.865 kb on - strandat 1682.869 kb on + strandat 1682.872 kb on - strandat 1682.872 kb on - strandat 1682.872 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM
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1,680,002 + Dsui_1599 0.31 -0.6
1,680,010 - Dsui_1599 0.31 -3.2
1,680,102 + Dsui_1599 0.39 -1.1
1,680,251 + Dsui_1599 0.51 -0.6
1,680,366 + Dsui_1599 0.61 -1.6
1,680,389 - Dsui_1599 0.63 -3.0
1,680,394 + Dsui_1599 0.63 -1.1
1,680,584 + Dsui_1599 0.79 -1.6
1,680,592 - Dsui_1599 0.80 -3.8
1,680,769 - -3.3
1,680,849 - -2.4
1,680,851 + +0.4
1,680,859 - -1.7
1,680,861 + -1.9
1,680,868 + -0.6
1,681,078 - Dsui_1600 0.23 -2.3
1,681,090 + Dsui_1600 0.24 -0.6
1,681,113 - Dsui_1600 0.26 -2.4
1,681,131 + +0.4
1,681,189 - Dsui_1600 0.33 -2.7
1,681,386 - Dsui_1600 0.51 -2.3
1,681,471 + Dsui_1600 0.59 +0.4
1,681,504 - Dsui_1600 0.62 -2.7
1,681,504 - Dsui_1600 0.62 -2.7
1,681,513 + +0.4
1,681,518 + -0.6
1,681,656 - Dsui_1600 0.76 -3.1
1,681,783 - Dsui_1600 0.88 -2.8
1,681,890 - -2.6
1,681,919 - -1.3
1,681,930 - -2.4
1,682,738 + -0.6
1,682,762 + +0.4
1,682,774 - -0.6
1,682,779 + -1.1
1,682,846 - -0.4
1,682,859 + -2.1
1,682,865 - -3.5
1,682,869 + +0.4
1,682,872 - -0.6
1,682,872 - -0.3
1,682,872 - -0.4

Or see this region's nucleotide sequence