Strain Fitness in Dechlorosoma suillum PS around Dsui_1553

Experiment: ALP with nitrate 75 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1552 and Dsui_1553 are separated by 1 nucleotidesDsui_1553 and Dsui_1554 are separated by 61 nucleotides Dsui_1552: Dsui_1552 - tRNA isopentenyltransferase MiaA, at 1,615,312 to 1,616,259 _1552 Dsui_1553: Dsui_1553 - regulator of competence-specific genes, at 1,616,261 to 1,616,635 _1553 Dsui_1554: Dsui_1554 - PAS domain S-box, at 1,616,697 to 1,619,519 _1554 Position (kb) 1616 1617Strain fitness (log2 ratio) -2 -1 0 1at 1615.262 kb on + strandat 1615.601 kb on + strand, within Dsui_1552at 1616.279 kb on - strandat 1616.317 kb on - strand, within Dsui_1553at 1616.442 kb on + strand, within Dsui_1553at 1616.466 kb on + strand, within Dsui_1553at 1616.576 kb on - strandat 1616.935 kb on - strandat 1617.172 kb on + strand, within Dsui_1554at 1617.248 kb on + strand, within Dsui_1554at 1617.257 kb on - strand, within Dsui_1554at 1617.285 kb on + strand, within Dsui_1554at 1617.320 kb on + strand, within Dsui_1554at 1617.392 kb on + strand, within Dsui_1554at 1617.392 kb on + strand, within Dsui_1554at 1617.400 kb on - strand, within Dsui_1554at 1617.468 kb on + strandat 1617.541 kb on - strand, within Dsui_1554at 1617.547 kb on + strand, within Dsui_1554at 1617.614 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM
remove
1,615,262 + -0.2
1,615,601 + Dsui_1552 0.30 +0.5
1,616,279 - +0.5
1,616,317 - Dsui_1553 0.15 -2.1
1,616,442 + Dsui_1553 0.48 -2.3
1,616,466 + Dsui_1553 0.55 -1.8
1,616,576 - -0.5
1,616,935 - +0.5
1,617,172 + Dsui_1554 0.17 -1.0
1,617,248 + Dsui_1554 0.20 +0.5
1,617,257 - Dsui_1554 0.20 +0.5
1,617,285 + Dsui_1554 0.21 +0.5
1,617,320 + Dsui_1554 0.22 +0.3
1,617,392 + Dsui_1554 0.25 +0.5
1,617,392 + Dsui_1554 0.25 -1.1
1,617,400 - Dsui_1554 0.25 -1.1
1,617,468 + +0.5
1,617,541 - Dsui_1554 0.30 +0.5
1,617,547 + Dsui_1554 0.30 -2.1
1,617,614 + +0.5

Or see this region's nucleotide sequence