Experiment: ALP with nitrate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1452 and Dsui_1453 are separated by 13 nucleotides Dsui_1453 and Dsui_1454 are separated by 7 nucleotides
Dsui_1452: Dsui_1452 - putative transmembrane sensor domain protein, at 1,508,637 to 1,510,850
_1452
Dsui_1453: Dsui_1453 - metal-dependent hydrolase, beta-lactamase superfamily III, at 1,510,864 to 1,511,637
_1453
Dsui_1454: Dsui_1454 - Rhodanese-like protein,cyclic nucleotide-binding protein, at 1,511,645 to 1,512,727
_1454
Position (kb)
1510
1511
1512 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1509.892 kb on - strand at 1510.062 kb on - strand, within Dsui_1452 at 1510.077 kb on - strand, within Dsui_1452 at 1510.197 kb on + strand, within Dsui_1452 at 1510.215 kb on - strand, within Dsui_1452 at 1510.232 kb on + strand, within Dsui_1452 at 1510.251 kb on - strand at 1510.314 kb on + strand, within Dsui_1452 at 1510.344 kb on + strand, within Dsui_1452 at 1510.430 kb on + strand, within Dsui_1452 at 1510.430 kb on + strand at 1510.487 kb on - strand, within Dsui_1452 at 1510.566 kb on - strand, within Dsui_1452 at 1510.580 kb on + strand, within Dsui_1452 at 1510.619 kb on - strand at 1510.642 kb on - strand at 1510.642 kb on - strand at 1510.682 kb on - strand at 1510.922 kb on + strand at 1510.922 kb on + strand at 1510.930 kb on - strand at 1510.930 kb on - strand at 1510.930 kb on - strand at 1511.021 kb on + strand, within Dsui_1453 at 1511.104 kb on + strand, within Dsui_1453 at 1511.190 kb on - strand at 1511.237 kb on + strand, within Dsui_1453 at 1511.237 kb on + strand, within Dsui_1453 at 1511.281 kb on + strand, within Dsui_1453 at 1511.380 kb on - strand, within Dsui_1453 at 1511.442 kb on + strand, within Dsui_1453 at 1511.474 kb on - strand, within Dsui_1453 at 1511.535 kb on + strand, within Dsui_1453 at 1511.630 kb on - strand at 1511.666 kb on + strand at 1511.934 kb on + strand, within Dsui_1454 at 1512.191 kb on - strand at 1512.438 kb on - strand at 1512.444 kb on + strand, within Dsui_1454 at 1512.499 kb on - strand at 1512.509 kb on - strand, within Dsui_1454
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM remove 1,509,892 - +0.5 1,510,062 - Dsui_1452 0.64 -1.1 1,510,077 - Dsui_1452 0.65 -0.5 1,510,197 + Dsui_1452 0.70 -0.5 1,510,215 - Dsui_1452 0.71 -0.5 1,510,232 + Dsui_1452 0.72 -1.5 1,510,251 - +0.5 1,510,314 + Dsui_1452 0.76 -0.2 1,510,344 + Dsui_1452 0.77 -0.5 1,510,430 + Dsui_1452 0.81 -0.1 1,510,430 + -1.1 1,510,487 - Dsui_1452 0.84 -2.7 1,510,566 - Dsui_1452 0.87 -1.1 1,510,580 + Dsui_1452 0.88 -1.2 1,510,619 - +0.5 1,510,642 - -3.7 1,510,642 - -0.5 1,510,682 - -0.5 1,510,922 + -3.2 1,510,922 + +0.2 1,510,930 - -0.5 1,510,930 - -0.5 1,510,930 - -1.5 1,511,021 + Dsui_1453 0.20 -1.5 1,511,104 + Dsui_1453 0.31 -2.1 1,511,190 - +0.5 1,511,237 + Dsui_1453 0.48 -2.0 1,511,237 + Dsui_1453 0.48 -1.1 1,511,281 + Dsui_1453 0.54 -2.2 1,511,380 - Dsui_1453 0.67 +0.5 1,511,442 + Dsui_1453 0.75 -1.3 1,511,474 - Dsui_1453 0.79 +0.5 1,511,535 + Dsui_1453 0.87 -1.8 1,511,630 - +0.5 1,511,666 + -0.9 1,511,934 + Dsui_1454 0.27 -1.3 1,512,191 - +0.5 1,512,438 - +0.5 1,512,444 + Dsui_1454 0.74 +0.5 1,512,499 - +0.5 1,512,509 - Dsui_1454 0.80 -0.5
Or see this region's nucleotide sequence