Experiment: ALP with nitrate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1213 and Dsui_1214 are separated by 40 nucleotides Dsui_1214 and Dsui_1215 are separated by 84 nucleotides Dsui_1215 and Dsui_1216 are separated by 15 nucleotides Dsui_1216 and Dsui_1217 are separated by 64 nucleotides
Dsui_1213: Dsui_1213 - putative glycoprotease GCP, at 1,270,477 to 1,271,505
_1213
Dsui_1214: Dsui_1214 - acyl-phosphate glycerol 3-phosphate acyltransferase, at 1,271,546 to 1,272,175
_1214
Dsui_1215: Dsui_1215 - FolB domain protein, at 1,272,260 to 1,272,613
_1215
Dsui_1216: Dsui_1216 - ybaK/ebsC protein, at 1,272,629 to 1,273,135
_1216
Dsui_1217: Dsui_1217 - tyrosine recombinase XerD, at 1,273,200 to 1,274,123
_1217
Position (kb) 1272
1273 Strain fitness (log2 ratio) -2
-1
0
1 at 1271.486 kb on + strand at 1272.212 kb on - strand at 1272.670 kb on + strand at 1272.671 kb on + strand at 1272.687 kb on - strand, within Dsui_1216 at 1272.742 kb on + strand, within Dsui_1216 at 1272.779 kb on - strand, within Dsui_1216 at 1272.819 kb on - strand, within Dsui_1216 at 1272.927 kb on + strand, within Dsui_1216 at 1272.994 kb on + strand, within Dsui_1216 at 1273.035 kb on - strand, within Dsui_1216 at 1273.044 kb on + strand, within Dsui_1216 at 1273.052 kb on - strand, within Dsui_1216 at 1273.090 kb on - strand at 1273.160 kb on - strand at 1273.258 kb on + strand at 1273.423 kb on + strand, within Dsui_1217 at 1273.533 kb on - strand, within Dsui_1217 at 1273.536 kb on + strand, within Dsui_1217 at 1273.558 kb on + strand, within Dsui_1217 at 1273.571 kb on + strand, within Dsui_1217
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM remove 1,271,486 + -0.4 1,272,212 - -0.6 1,272,670 + -0.3 1,272,671 + -0.3 1,272,687 - Dsui_1216 0.11 -1.6 1,272,742 + Dsui_1216 0.22 -0.1 1,272,779 - Dsui_1216 0.30 -0.7 1,272,819 - Dsui_1216 0.37 -0.3 1,272,927 + Dsui_1216 0.59 +0.4 1,272,994 + Dsui_1216 0.72 -0.1 1,273,035 - Dsui_1216 0.80 +0.0 1,273,044 + Dsui_1216 0.82 -1.6 1,273,052 - Dsui_1216 0.83 -1.3 1,273,090 - +0.0 1,273,160 - -0.2 1,273,258 + -1.9 1,273,423 + Dsui_1217 0.24 -1.6 1,273,533 - Dsui_1217 0.36 -0.3 1,273,536 + Dsui_1217 0.36 -1.7 1,273,558 + Dsui_1217 0.39 +0.4 1,273,571 + Dsui_1217 0.40 -0.6
Or see this region's nucleotide sequence