Experiment: ALP with nitrate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0846 and Dsui_0847 overlap by 4 nucleotides Dsui_0847 and Dsui_0848 are separated by 4 nucleotides Dsui_0848 and Dsui_0849 overlap by 4 nucleotides
Dsui_0846: Dsui_0846 - glucose-inhibited division protein A, at 863,268 to 865,142
_0846
Dsui_0847: Dsui_0847 - 16S rRNA (guanine(527)-N(7))-methyltransferase GidB, at 865,139 to 865,780
_0847
Dsui_0848: Dsui_0848 - ATPase involved in chromosome partitioning, at 865,785 to 866,567
_0848
Dsui_0849: Dsui_0849 - ParB-like partition protein, at 866,564 to 867,397
_0849
Position (kb) 865
866
867 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 864.801 kb on + strand, within Dsui_0846 at 864.816 kb on + strand, within Dsui_0846 at 864.944 kb on + strand, within Dsui_0846 at 865.143 kb on - strand at 865.186 kb on + strand at 865.196 kb on + strand at 865.196 kb on + strand at 865.216 kb on + strand, within Dsui_0847 at 865.216 kb on + strand, within Dsui_0847 at 865.216 kb on + strand, within Dsui_0847 at 865.216 kb on + strand, within Dsui_0847 at 865.224 kb on - strand, within Dsui_0847 at 865.233 kb on + strand, within Dsui_0847 at 865.275 kb on - strand, within Dsui_0847 at 865.282 kb on + strand, within Dsui_0847 at 865.291 kb on + strand, within Dsui_0847 at 865.299 kb on - strand, within Dsui_0847 at 865.299 kb on - strand, within Dsui_0847 at 865.313 kb on - strand, within Dsui_0847 at 865.565 kb on + strand, within Dsui_0847 at 865.608 kb on + strand, within Dsui_0847 at 865.608 kb on + strand, within Dsui_0847 at 865.712 kb on + strand, within Dsui_0847 at 865.712 kb on + strand, within Dsui_0847 at 865.775 kb on + strand at 865.790 kb on + strand at 867.531 kb on + strand at 867.539 kb on - strand at 867.548 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM remove 864,801 + Dsui_0846 0.82 -3.2 864,816 + Dsui_0846 0.83 -2.2 864,944 + Dsui_0846 0.89 +1.1 865,143 - -2.1 865,186 + -0.9 865,196 + +0.2 865,196 + +0.1 865,216 + Dsui_0847 0.12 +0.3 865,216 + Dsui_0847 0.12 +0.0 865,216 + Dsui_0847 0.12 +0.5 865,216 + Dsui_0847 0.12 +0.0 865,224 - Dsui_0847 0.13 -1.1 865,233 + Dsui_0847 0.15 +0.1 865,275 - Dsui_0847 0.21 +0.5 865,282 + Dsui_0847 0.22 +0.2 865,291 + Dsui_0847 0.24 +0.1 865,299 - Dsui_0847 0.25 +0.5 865,299 - Dsui_0847 0.25 -2.3 865,313 - Dsui_0847 0.27 +0.5 865,565 + Dsui_0847 0.66 -0.1 865,608 + Dsui_0847 0.73 +0.0 865,608 + Dsui_0847 0.73 +0.3 865,712 + Dsui_0847 0.89 +0.3 865,712 + Dsui_0847 0.89 -0.0 865,775 + -0.7 865,790 + -1.1 867,531 + -0.6 867,539 - -0.5 867,548 + +0.7
Or see this region's nucleotide sequence