Experiment: ALP with nitrate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0804 and Dsui_0805 are separated by 200 nucleotides Dsui_0805 and Dsui_0806 are separated by 651 nucleotides
Dsui_0804: Dsui_0804 - hypothetical protein, at 811,179 to 812,312
_0804
Dsui_0805: Dsui_0805 - primosomal protein N'', at 812,513 to 814,537
_0805
Dsui_0806: Dsui_0806 - uroporphyrinogen decarboxylase, at 815,189 to 816,271
_0806
Position (kb) 812
813
814
815 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 811.526 kb on + strand, within Dsui_0804 at 811.589 kb on + strand, within Dsui_0804 at 811.600 kb on + strand, within Dsui_0804 at 811.625 kb on + strand, within Dsui_0804 at 811.731 kb on + strand at 811.746 kb on - strand, within Dsui_0804 at 811.815 kb on + strand, within Dsui_0804 at 811.847 kb on + strand, within Dsui_0804 at 811.855 kb on - strand, within Dsui_0804 at 811.855 kb on - strand, within Dsui_0804 at 811.880 kb on + strand, within Dsui_0804 at 811.884 kb on + strand, within Dsui_0804 at 811.884 kb on + strand at 811.892 kb on - strand, within Dsui_0804 at 811.894 kb on - strand, within Dsui_0804 at 811.902 kb on - strand, within Dsui_0804 at 811.945 kb on + strand, within Dsui_0804 at 811.953 kb on - strand, within Dsui_0804 at 811.955 kb on + strand, within Dsui_0804 at 811.963 kb on - strand, within Dsui_0804 at 811.970 kb on + strand, within Dsui_0804 at 811.970 kb on + strand, within Dsui_0804 at 811.978 kb on - strand, within Dsui_0804 at 812.012 kb on - strand, within Dsui_0804 at 812.063 kb on + strand, within Dsui_0804 at 812.063 kb on + strand, within Dsui_0804 at 812.153 kb on + strand, within Dsui_0804 at 812.232 kb on - strand at 812.266 kb on + strand at 812.332 kb on - strand at 812.346 kb on + strand at 812.353 kb on - strand at 812.354 kb on - strand at 812.459 kb on - strand at 812.485 kb on - strand at 814.583 kb on + strand at 814.584 kb on + strand at 814.584 kb on + strand at 814.608 kb on - strand at 814.659 kb on + strand at 814.671 kb on + strand at 814.683 kb on + strand at 814.683 kb on + strand at 814.683 kb on + strand at 814.683 kb on + strand at 814.683 kb on + strand at 814.683 kb on + strand at 814.683 kb on + strand at 814.686 kb on - strand at 814.691 kb on - strand at 814.691 kb on - strand at 814.691 kb on - strand at 814.691 kb on - strand at 814.691 kb on - strand at 814.691 kb on - strand at 814.695 kb on + strand at 814.703 kb on - strand at 814.706 kb on + strand at 814.740 kb on + strand at 814.748 kb on - strand at 814.794 kb on + strand at 814.830 kb on + strand at 814.831 kb on + strand at 814.831 kb on + strand at 814.838 kb on - strand at 814.842 kb on + strand at 814.851 kb on - strand at 814.874 kb on + strand at 814.926 kb on - strand at 814.954 kb on + strand at 814.962 kb on - strand at 814.962 kb on - strand at 814.976 kb on + strand at 814.980 kb on - strand at 815.002 kb on + strand at 815.010 kb on - strand at 815.021 kb on - strand at 815.038 kb on - strand at 815.043 kb on - strand at 815.043 kb on - strand at 815.128 kb on - strand at 815.128 kb on - strand at 815.171 kb on + strand at 815.181 kb on + strand at 815.182 kb on + strand at 815.189 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM remove 811,526 + Dsui_0804 0.31 +0.5 811,589 + Dsui_0804 0.36 +0.5 811,600 + Dsui_0804 0.37 -0.5 811,625 + Dsui_0804 0.39 -1.8 811,731 + +0.5 811,746 - Dsui_0804 0.50 -2.3 811,815 + Dsui_0804 0.56 -1.0 811,847 + Dsui_0804 0.59 -0.8 811,855 - Dsui_0804 0.60 +2.1 811,855 - Dsui_0804 0.60 -2.0 811,880 + Dsui_0804 0.62 +0.5 811,884 + Dsui_0804 0.62 -0.5 811,884 + +0.5 811,892 - Dsui_0804 0.63 +0.5 811,894 - Dsui_0804 0.63 -0.5 811,902 - Dsui_0804 0.64 -1.0 811,945 + Dsui_0804 0.68 +0.5 811,953 - Dsui_0804 0.68 +0.5 811,955 + Dsui_0804 0.68 +0.5 811,963 - Dsui_0804 0.69 -0.5 811,970 + Dsui_0804 0.70 -1.5 811,970 + Dsui_0804 0.70 -0.5 811,978 - Dsui_0804 0.70 +0.5 812,012 - Dsui_0804 0.73 +0.5 812,063 + Dsui_0804 0.78 -3.2 812,063 + Dsui_0804 0.78 -1.0 812,153 + Dsui_0804 0.86 -0.5 812,232 - +1.5 812,266 + +0.5 812,332 - +0.5 812,346 + -1.0 812,353 - -0.5 812,354 - -0.5 812,459 - -2.0 812,485 - +0.2 814,583 + +0.5 814,584 + +0.5 814,584 + -1.0 814,608 - +0.5 814,659 + -1.5 814,671 + -0.5 814,683 + +0.5 814,683 + -1.0 814,683 + +0.5 814,683 + -0.5 814,683 + +0.5 814,683 + -2.6 814,683 + +0.5 814,686 - +0.5 814,691 - -1.5 814,691 - -0.5 814,691 - -0.5 814,691 - +0.5 814,691 - -1.8 814,691 - +0.5 814,695 + +0.5 814,703 - +0.5 814,706 + -0.5 814,740 + +0.5 814,748 - +0.5 814,794 + +0.5 814,830 + -1.5 814,831 + +0.5 814,831 + -0.5 814,838 - +0.5 814,842 + -0.5 814,851 - +1.5 814,874 + -1.0 814,926 - -2.2 814,954 + -1.0 814,962 - -0.7 814,962 - +0.3 814,976 + -1.3 814,980 - -1.2 815,002 + -0.9 815,010 - -0.5 815,021 - +0.5 815,038 - -0.6 815,043 - -0.4 815,043 - -0.1 815,128 - +0.2 815,128 - -0.2 815,171 + -0.5 815,181 + -1.4 815,182 + +0.5 815,189 - +0.1
Or see this region's nucleotide sequence