Experiment: ALP with nitrate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0656 and Dsui_0657 are separated by 33 nucleotides Dsui_0657 and Dsui_0658 are separated by 79 nucleotides Dsui_0658 and Dsui_0659 are separated by 14 nucleotides Dsui_0659 and Dsui_0660 are separated by 21 nucleotides
Dsui_0656: Dsui_0656 - chemotaxis protein histidine kinase-like protein, at 649,135 to 655,254
_0656
Dsui_0657: Dsui_0657 - methyl-accepting chemotaxis protein, at 655,288 to 657,486
_0657
Dsui_0658: Dsui_0658 - chemotaxis signal transduction protein, at 657,566 to 658,078
_0658
Dsui_0659: Dsui_0659 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 658,093 to 658,455
_0659
Dsui_0660: Dsui_0660 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 658,477 to 658,875
_0660
Position (kb) 655
656
657
658 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 654.356 kb on + strand, within Dsui_0656 at 654.402 kb on + strand at 654.414 kb on + strand at 654.589 kb on - strand, within Dsui_0656 at 654.758 kb on + strand at 654.791 kb on + strand at 654.824 kb on + strand at 654.882 kb on + strand at 655.011 kb on + strand at 655.022 kb on + strand at 655.051 kb on - strand at 655.070 kb on - strand at 655.213 kb on - strand at 655.224 kb on - strand at 655.252 kb on + strand at 655.304 kb on - strand at 655.304 kb on - strand at 655.384 kb on + strand at 655.491 kb on + strand at 655.749 kb on + strand, within Dsui_0657 at 655.817 kb on - strand, within Dsui_0657 at 655.817 kb on - strand, within Dsui_0657 at 655.868 kb on - strand, within Dsui_0657 at 655.901 kb on + strand at 655.920 kb on - strand, within Dsui_0657 at 655.996 kb on + strand, within Dsui_0657 at 656.035 kb on - strand, within Dsui_0657 at 656.085 kb on - strand, within Dsui_0657 at 656.089 kb on + strand, within Dsui_0657 at 656.102 kb on - strand, within Dsui_0657 at 656.131 kb on - strand, within Dsui_0657 at 656.137 kb on - strand, within Dsui_0657 at 656.220 kb on - strand, within Dsui_0657 at 656.350 kb on + strand, within Dsui_0657 at 656.351 kb on + strand, within Dsui_0657 at 656.465 kb on - strand, within Dsui_0657 at 656.486 kb on - strand, within Dsui_0657 at 656.593 kb on - strand, within Dsui_0657 at 656.638 kb on - strand, within Dsui_0657 at 656.783 kb on - strand, within Dsui_0657 at 656.788 kb on - strand, within Dsui_0657 at 656.863 kb on - strand, within Dsui_0657 at 656.891 kb on + strand, within Dsui_0657 at 656.897 kb on + strand, within Dsui_0657 at 656.905 kb on - strand, within Dsui_0657 at 656.974 kb on + strand, within Dsui_0657 at 657.064 kb on - strand, within Dsui_0657 at 657.089 kb on + strand, within Dsui_0657 at 657.140 kb on + strand at 657.247 kb on - strand, within Dsui_0657 at 657.267 kb on - strand at 657.362 kb on + strand at 657.602 kb on + strand at 657.619 kb on + strand at 657.662 kb on + strand, within Dsui_0658 at 657.791 kb on - strand, within Dsui_0658 at 657.866 kb on - strand, within Dsui_0658 at 657.966 kb on - strand, within Dsui_0658 at 658.090 kb on + strand at 658.096 kb on - strand at 658.251 kb on + strand at 658.316 kb on - strand, within Dsui_0659 at 658.328 kb on + strand at 658.457 kb on + strand at 658.458 kb on - strand at 658.459 kb on - strand at 658.486 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM remove 654,356 + Dsui_0656 0.85 -2.1 654,402 + +1.2 654,414 + -0.5 654,589 - Dsui_0656 0.89 +0.2 654,758 + -2.3 654,791 + +0.5 654,824 + -0.5 654,882 + -1.5 655,011 + -2.1 655,022 + +0.0 655,051 - +0.1 655,070 - -0.8 655,213 - -0.4 655,224 - -0.4 655,252 + -1.1 655,304 - -0.7 655,304 - -0.4 655,384 + -0.8 655,491 + +0.5 655,749 + Dsui_0657 0.21 -0.5 655,817 - Dsui_0657 0.24 -1.1 655,817 - Dsui_0657 0.24 -0.6 655,868 - Dsui_0657 0.26 -1.1 655,901 + +0.5 655,920 - Dsui_0657 0.29 -0.9 655,996 + Dsui_0657 0.32 -0.4 656,035 - Dsui_0657 0.34 -1.0 656,085 - Dsui_0657 0.36 -0.8 656,089 + Dsui_0657 0.36 -3.2 656,102 - Dsui_0657 0.37 -1.2 656,131 - Dsui_0657 0.38 -0.3 656,137 - Dsui_0657 0.39 -0.9 656,220 - Dsui_0657 0.42 -0.6 656,350 + Dsui_0657 0.48 -1.5 656,351 + Dsui_0657 0.48 -1.1 656,465 - Dsui_0657 0.54 -1.2 656,486 - Dsui_0657 0.54 -0.7 656,593 - Dsui_0657 0.59 -1.0 656,638 - Dsui_0657 0.61 -0.6 656,783 - Dsui_0657 0.68 -1.1 656,788 - Dsui_0657 0.68 -0.1 656,863 - Dsui_0657 0.72 -0.5 656,891 + Dsui_0657 0.73 -0.5 656,897 + Dsui_0657 0.73 -1.1 656,905 - Dsui_0657 0.74 -1.2 656,974 + Dsui_0657 0.77 +0.5 657,064 - Dsui_0657 0.81 -0.6 657,089 + Dsui_0657 0.82 -1.1 657,140 + +0.5 657,247 - Dsui_0657 0.89 -0.7 657,267 - -0.5 657,362 + +0.5 657,602 + -2.3 657,619 + +0.5 657,662 + Dsui_0658 0.19 +2.1 657,791 - Dsui_0658 0.44 +0.5 657,866 - Dsui_0658 0.58 +0.5 657,966 - Dsui_0658 0.78 +0.4 658,090 + +0.5 658,096 - -0.1 658,251 + +0.5 658,316 - Dsui_0659 0.61 -2.2 658,328 + +0.5 658,457 + +0.5 658,458 - -0.1 658,459 - -0.6 658,486 - +0.1
Or see this region's nucleotide sequence