Strain Fitness in Dechlorosoma suillum PS around Dsui_0624

Experiment: ALP with nitrate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0622 and Dsui_0623 are separated by 1 nucleotidesDsui_0623 and Dsui_0624 are separated by 12 nucleotidesDsui_0624 and Dsui_0625 are separated by 2 nucleotidesDsui_0625 and Dsui_0626 are separated by 2 nucleotides Dsui_0622: Dsui_0622 - NosL, at 617,396 to 618,001 _0622 Dsui_0623: Dsui_0623 - putative lipoprotein involved in nitrous oxide reduction, at 618,003 to 618,488 _0623 Dsui_0624: Dsui_0624 - hypothetical protein, at 618,501 to 619,610 _0624 Dsui_0625: Dsui_0625 - putative metal-sulfur cluster biosynthetic enzyme, at 619,613 to 619,924 _0625 Dsui_0626: Dsui_0626 - ABC-type branched-chain amino acid transport systems, ATPase component, at 619,927 to 620,643 _0626 Position (kb) 618 619 620Strain fitness (log2 ratio) -3 -2 -1 0 1at 617.518 kb on + strand, within Dsui_0622at 617.550 kb on - strand, within Dsui_0622at 617.621 kb on + strand, within Dsui_0622at 617.634 kb on - strand, within Dsui_0622at 617.639 kb on - strand, within Dsui_0622at 617.687 kb on - strand, within Dsui_0622at 617.713 kb on + strand, within Dsui_0622at 617.814 kb on - strand, within Dsui_0622at 617.819 kb on - strand, within Dsui_0622at 617.906 kb on - strand, within Dsui_0622at 617.950 kb on - strandat 618.035 kb on + strandat 618.137 kb on - strand, within Dsui_0623at 618.261 kb on - strand, within Dsui_0623at 618.271 kb on - strand, within Dsui_0623at 618.276 kb on - strand, within Dsui_0623at 618.304 kb on + strand, within Dsui_0623at 618.337 kb on + strand, within Dsui_0623at 618.507 kb on - strandat 618.667 kb on - strand, within Dsui_0624at 618.995 kb on + strandat 619.000 kb on + strandat 619.110 kb on + strand, within Dsui_0624at 619.591 kb on + strandat 619.660 kb on - strand, within Dsui_0625at 619.693 kb on + strand, within Dsui_0625at 619.701 kb on - strand, within Dsui_0625at 619.752 kb on - strand, within Dsui_0625at 619.827 kb on + strand, within Dsui_0625at 619.835 kb on - strand, within Dsui_0625at 619.856 kb on - strand, within Dsui_0625at 619.891 kb on - strand, within Dsui_0625at 619.896 kb on - strandat 619.946 kb on + strandat 619.987 kb on + strandat 620.177 kb on - strand, within Dsui_0626at 620.177 kb on - strand, within Dsui_0626at 620.310 kb on - strand, within Dsui_0626at 620.336 kb on + strand, within Dsui_0626at 620.496 kb on - strand, within Dsui_0626at 620.502 kb on + strand, within Dsui_0626

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM
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617,518 + Dsui_0622 0.20 -1.0
617,550 - Dsui_0622 0.25 +0.5
617,621 + Dsui_0622 0.37 -1.5
617,634 - Dsui_0622 0.39 -3.0
617,639 - Dsui_0622 0.40 -2.3
617,687 - Dsui_0622 0.48 -1.5
617,713 + Dsui_0622 0.52 -0.3
617,814 - Dsui_0622 0.69 -1.1
617,819 - Dsui_0622 0.70 -2.5
617,906 - Dsui_0622 0.84 +0.5
617,950 - +0.5
618,035 + -0.4
618,137 - Dsui_0623 0.28 +0.5
618,261 - Dsui_0623 0.53 +0.5
618,271 - Dsui_0623 0.55 +0.5
618,276 - Dsui_0623 0.56 +0.5
618,304 + Dsui_0623 0.62 +0.1
618,337 + Dsui_0623 0.69 -2.4
618,507 - -0.1
618,667 - Dsui_0624 0.15 -0.8
618,995 + +0.5
619,000 + -0.5
619,110 + Dsui_0624 0.55 -2.7
619,591 + +0.5
619,660 - Dsui_0625 0.15 -0.3
619,693 + Dsui_0625 0.26 +0.5
619,701 - Dsui_0625 0.28 +0.2
619,752 - Dsui_0625 0.45 -0.0
619,827 + Dsui_0625 0.69 -1.5
619,835 - Dsui_0625 0.71 -0.4
619,856 - Dsui_0625 0.78 +0.1
619,891 - Dsui_0625 0.89 +0.2
619,896 - -0.3
619,946 + -2.3
619,987 + -2.1
620,177 - Dsui_0626 0.35 +0.8
620,177 - Dsui_0626 0.35 +0.6
620,310 - Dsui_0626 0.53 -0.2
620,336 + Dsui_0626 0.57 +0.5
620,496 - Dsui_0626 0.79 +0.3
620,502 + Dsui_0626 0.80 -1.5

Or see this region's nucleotide sequence