Experiment: ALP with nitrate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0597 and Dsui_0598 are separated by 81 nucleotides Dsui_0598 and Dsui_0599 are separated by 136 nucleotides Dsui_0599 and Dsui_0600 are separated by 42 nucleotides
Dsui_0597: Dsui_0597 - dihydroorotase, multifunctional complex type, at 593,866 to 595,110
_0597
Dsui_0598: Dsui_0598 - hypothetical protein, at 595,192 to 595,494
_0598
Dsui_0599: Dsui_0599 - response regulator of the LytR/AlgR family, at 595,631 to 596,344
_0599
Dsui_0600: Dsui_0600 - TIGR00251 family protein, at 596,387 to 596,677
_0600
Position (kb) 595
596 Strain fitness (log2 ratio) -2
-1
0
1 at 595.104 kb on + strand at 595.288 kb on + strand, within Dsui_0598 at 595.292 kb on + strand, within Dsui_0598 at 595.297 kb on + strand, within Dsui_0598 at 595.305 kb on - strand, within Dsui_0598 at 595.399 kb on - strand, within Dsui_0598 at 595.539 kb on - strand at 595.751 kb on + strand, within Dsui_0599 at 595.795 kb on - strand at 595.928 kb on + strand, within Dsui_0599 at 596.051 kb on + strand, within Dsui_0599 at 596.069 kb on + strand, within Dsui_0599 at 596.088 kb on - strand, within Dsui_0599 at 596.105 kb on + strand, within Dsui_0599 at 596.107 kb on + strand, within Dsui_0599 at 596.107 kb on + strand, within Dsui_0599 at 596.107 kb on + strand, within Dsui_0599 at 596.107 kb on + strand, within Dsui_0599 at 596.107 kb on + strand, within Dsui_0599 at 596.107 kb on + strand, within Dsui_0599 at 596.107 kb on + strand, within Dsui_0599 at 596.107 kb on + strand, within Dsui_0599 at 596.115 kb on - strand, within Dsui_0599 at 596.115 kb on - strand, within Dsui_0599 at 596.115 kb on - strand, within Dsui_0599 at 596.115 kb on - strand, within Dsui_0599 at 596.115 kb on - strand, within Dsui_0599 at 596.115 kb on - strand, within Dsui_0599 at 596.115 kb on - strand, within Dsui_0599 at 596.138 kb on + strand, within Dsui_0599 at 596.206 kb on + strand, within Dsui_0599 at 596.214 kb on - strand, within Dsui_0599 at 596.348 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM remove 595,104 + -0.1 595,288 + Dsui_0598 0.32 -0.3 595,292 + Dsui_0598 0.33 -2.4 595,297 + Dsui_0598 0.35 -2.3 595,305 - Dsui_0598 0.37 -1.3 595,399 - Dsui_0598 0.68 -2.1 595,539 - +1.5 595,751 + Dsui_0599 0.17 -0.5 595,795 - +0.5 595,928 + Dsui_0599 0.42 -0.5 596,051 + Dsui_0599 0.59 -0.5 596,069 + Dsui_0599 0.61 -1.3 596,088 - Dsui_0599 0.64 -1.1 596,105 + Dsui_0599 0.66 +0.5 596,107 + Dsui_0599 0.67 -1.1 596,107 + Dsui_0599 0.67 -1.1 596,107 + Dsui_0599 0.67 -0.5 596,107 + Dsui_0599 0.67 -0.5 596,107 + Dsui_0599 0.67 -1.5 596,107 + Dsui_0599 0.67 -2.1 596,107 + Dsui_0599 0.67 -0.5 596,107 + Dsui_0599 0.67 +0.5 596,115 - Dsui_0599 0.68 +0.5 596,115 - Dsui_0599 0.68 -1.1 596,115 - Dsui_0599 0.68 -0.9 596,115 - Dsui_0599 0.68 -1.9 596,115 - Dsui_0599 0.68 -0.3 596,115 - Dsui_0599 0.68 -1.7 596,115 - Dsui_0599 0.68 -0.5 596,138 + Dsui_0599 0.71 -0.5 596,206 + Dsui_0599 0.81 -0.9 596,214 - Dsui_0599 0.82 -1.8 596,348 - -0.2
Or see this region's nucleotide sequence