Strain Fitness in Dechlorosoma suillum PS around Dsui_0519

Experiment: ALP with nitrate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0518 and Dsui_0519 are separated by 9 nucleotidesDsui_0519 and Dsui_0520 are separated by 330 nucleotides Dsui_0518: Dsui_0518 - methylmalonyl-CoA-mutase-associated GTPase MeaB (from data), at 524,030 to 525,058 _0518 Dsui_0519: Dsui_0519 - Methylmalonyl-CoA mutase (EC 5.4.99.2) (from data), at 525,068 to 527,233 _0519 Dsui_0520: Dsui_0520 - transcriptional regulator, at 527,564 to 528,220 _0520 Position (kb) 525 526 527 528Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 524.077 kb on - strandat 524.121 kb on + strandat 524.157 kb on + strand, within Dsui_0518at 524.311 kb on - strand, within Dsui_0518at 524.339 kb on + strand, within Dsui_0518at 524.347 kb on - strand, within Dsui_0518at 524.516 kb on - strand, within Dsui_0518at 524.549 kb on - strand, within Dsui_0518at 524.549 kb on - strand, within Dsui_0518at 524.642 kb on - strand, within Dsui_0518at 524.697 kb on + strand, within Dsui_0518at 524.781 kb on - strand, within Dsui_0518at 524.946 kb on + strand, within Dsui_0518at 525.009 kb on + strandat 525.023 kb on + strandat 525.034 kb on + strandat 525.059 kb on + strandat 525.059 kb on + strandat 525.059 kb on + strandat 525.065 kb on + strandat 525.067 kb on - strandat 525.072 kb on - strandat 525.179 kb on - strandat 525.299 kb on + strand, within Dsui_0519at 525.300 kb on - strand, within Dsui_0519at 525.449 kb on + strand, within Dsui_0519at 525.467 kb on + strand, within Dsui_0519at 525.499 kb on - strand, within Dsui_0519at 525.647 kb on - strand, within Dsui_0519at 525.647 kb on - strand, within Dsui_0519at 525.706 kb on - strand, within Dsui_0519at 525.813 kb on + strand, within Dsui_0519at 525.823 kb on + strand, within Dsui_0519at 525.823 kb on + strand, within Dsui_0519at 525.823 kb on + strand, within Dsui_0519at 525.840 kb on - strand, within Dsui_0519at 525.938 kb on - strand, within Dsui_0519at 525.938 kb on - strand, within Dsui_0519at 525.938 kb on - strand, within Dsui_0519at 525.943 kb on - strand, within Dsui_0519at 526.026 kb on + strand, within Dsui_0519at 526.034 kb on - strand, within Dsui_0519at 526.039 kb on - strand, within Dsui_0519at 526.041 kb on - strand, within Dsui_0519at 526.189 kb on - strand, within Dsui_0519at 526.211 kb on + strand, within Dsui_0519at 526.249 kb on + strand, within Dsui_0519at 526.257 kb on - strand, within Dsui_0519at 526.272 kb on - strand, within Dsui_0519at 526.318 kb on - strand, within Dsui_0519at 526.468 kb on - strand, within Dsui_0519at 526.469 kb on - strand, within Dsui_0519at 526.544 kb on + strand, within Dsui_0519at 526.547 kb on - strand, within Dsui_0519at 526.547 kb on - strand, within Dsui_0519at 526.547 kb on - strand, within Dsui_0519at 526.552 kb on - strand, within Dsui_0519at 526.557 kb on - strand, within Dsui_0519at 526.572 kb on + strand, within Dsui_0519at 526.613 kb on - strand, within Dsui_0519at 526.638 kb on - strand, within Dsui_0519at 526.666 kb on + strand, within Dsui_0519at 526.843 kb on + strand, within Dsui_0519at 526.843 kb on + strand, within Dsui_0519at 526.881 kb on - strand, within Dsui_0519at 526.890 kb on - strand, within Dsui_0519at 526.983 kb on + strandat 527.026 kb on + strandat 527.060 kb on + strandat 527.063 kb on - strandat 527.129 kb on - strandat 527.169 kb on + strandat 527.177 kb on - strandat 527.177 kb on - strandat 527.233 kb on + strandat 527.234 kb on - strandat 527.241 kb on - strandat 527.247 kb on + strandat 527.302 kb on - strandat 527.511 kb on - strandat 527.563 kb on + strandat 527.674 kb on + strand, within Dsui_0520at 527.720 kb on + strand, within Dsui_0520at 527.754 kb on + strand, within Dsui_0520at 527.791 kb on + strand, within Dsui_0520at 527.791 kb on + strand, within Dsui_0520at 527.883 kb on + strand, within Dsui_0520at 527.952 kb on + strand, within Dsui_0520at 527.953 kb on + strand, within Dsui_0520at 527.960 kb on - strand, within Dsui_0520at 527.960 kb on - strand, within Dsui_0520at 528.101 kb on + strand, within Dsui_0520at 528.168 kb on - strandat 528.194 kb on + strandat 528.205 kb on + strandat 528.207 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM
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524,077 - -0.4
524,121 + -0.6
524,157 + Dsui_0518 0.12 +0.4
524,311 - Dsui_0518 0.27 -3.2
524,339 + Dsui_0518 0.30 -2.4
524,347 - Dsui_0518 0.31 -0.6
524,516 - Dsui_0518 0.47 -0.4
524,549 - Dsui_0518 0.50 -0.7
524,549 - Dsui_0518 0.50 +0.4
524,642 - Dsui_0518 0.59 -0.3
524,697 + Dsui_0518 0.65 -1.9
524,781 - Dsui_0518 0.73 -0.4
524,946 + Dsui_0518 0.89 -1.9
525,009 + -2.1
525,023 + -0.1
525,034 + -1.6
525,059 + +0.4
525,059 + +0.4
525,059 + -1.1
525,065 + +0.4
525,067 - +0.2
525,072 - -0.1
525,179 - -0.4
525,299 + Dsui_0519 0.11 -0.6
525,300 - Dsui_0519 0.11 +0.1
525,449 + Dsui_0519 0.18 -0.5
525,467 + Dsui_0519 0.18 -0.5
525,499 - Dsui_0519 0.20 -0.8
525,647 - Dsui_0519 0.27 -0.6
525,647 - Dsui_0519 0.27 -0.2
525,706 - Dsui_0519 0.29 -0.1
525,813 + Dsui_0519 0.34 -1.1
525,823 + Dsui_0519 0.35 -0.5
525,823 + Dsui_0519 0.35 -1.9
525,823 + Dsui_0519 0.35 -0.5
525,840 - Dsui_0519 0.36 +0.0
525,938 - Dsui_0519 0.40 -0.1
525,938 - Dsui_0519 0.40 -0.7
525,938 - Dsui_0519 0.40 -0.4
525,943 - Dsui_0519 0.40 -0.5
526,026 + Dsui_0519 0.44 +0.5
526,034 - Dsui_0519 0.45 -0.0
526,039 - Dsui_0519 0.45 -0.4
526,041 - Dsui_0519 0.45 -0.8
526,189 - Dsui_0519 0.52 -0.1
526,211 + Dsui_0519 0.53 -2.5
526,249 + Dsui_0519 0.55 -1.9
526,257 - Dsui_0519 0.55 +0.1
526,272 - Dsui_0519 0.56 -0.3
526,318 - Dsui_0519 0.58 -0.2
526,468 - Dsui_0519 0.65 -0.2
526,469 - Dsui_0519 0.65 -0.9
526,544 + Dsui_0519 0.68 -2.1
526,547 - Dsui_0519 0.68 -0.5
526,547 - Dsui_0519 0.68 -0.1
526,547 - Dsui_0519 0.68 -0.2
526,552 - Dsui_0519 0.69 +0.2
526,557 - Dsui_0519 0.69 -0.2
526,572 + Dsui_0519 0.69 -0.5
526,613 - Dsui_0519 0.71 -0.0
526,638 - Dsui_0519 0.72 +0.2
526,666 + Dsui_0519 0.74 +0.5
526,843 + Dsui_0519 0.82 +0.5
526,843 + Dsui_0519 0.82 +0.5
526,881 - Dsui_0519 0.84 -0.3
526,890 - Dsui_0519 0.84 -0.2
526,983 + +0.5
527,026 + +0.4
527,060 + -1.6
527,063 - -0.4
527,129 - -0.5
527,169 + -1.1
527,177 - -0.2
527,177 - +0.8
527,233 + +0.4
527,234 - -0.4
527,241 - -0.5
527,247 + -1.1
527,302 - -0.2
527,511 - +0.4
527,563 + -0.2
527,674 + Dsui_0520 0.17 -4.6
527,720 + Dsui_0520 0.24 -3.4
527,754 + Dsui_0520 0.29 -5.3
527,791 + Dsui_0520 0.35 -4.1
527,791 + Dsui_0520 0.35 -4.8
527,883 + Dsui_0520 0.49 -4.7
527,952 + Dsui_0520 0.59 -4.4
527,953 + Dsui_0520 0.59 -4.7
527,960 - Dsui_0520 0.60 +0.4
527,960 - Dsui_0520 0.60 -0.6
528,101 + Dsui_0520 0.82 -4.8
528,168 - -0.6
528,194 + -1.6
528,205 + -0.3
528,207 - +1.4

Or see this region's nucleotide sequence