Experiment: ALP with nitrate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0426 and Dsui_0427 are separated by 121 nucleotides Dsui_0427 and Dsui_0428 are separated by 145 nucleotides
Dsui_0426: Dsui_0426 - transcriptional regulator, at 430,388 to 431,302
_0426
Dsui_0427: Dsui_0427 - NADH:flavin oxidoreductase, at 431,424 to 432,527
_0427
Dsui_0428: Dsui_0428 - methyl-accepting chemotaxis protein, at 432,673 to 434,526
_0428
Position (kb) 431
432
433 Strain fitness (log2 ratio) -2
-1
0
1 at 430.439 kb on + strand at 430.558 kb on + strand, within Dsui_0426 at 430.575 kb on + strand, within Dsui_0426 at 430.583 kb on - strand, within Dsui_0426 at 430.600 kb on - strand, within Dsui_0426 at 430.652 kb on + strand, within Dsui_0426 at 430.655 kb on - strand, within Dsui_0426 at 430.695 kb on - strand, within Dsui_0426 at 430.700 kb on - strand, within Dsui_0426 at 430.811 kb on - strand, within Dsui_0426 at 430.878 kb on - strand, within Dsui_0426 at 430.883 kb on - strand, within Dsui_0426 at 430.996 kb on - strand, within Dsui_0426 at 431.055 kb on + strand at 431.182 kb on + strand, within Dsui_0426 at 431.191 kb on - strand, within Dsui_0426 at 431.233 kb on - strand at 431.254 kb on - strand at 431.307 kb on - strand at 431.310 kb on - strand at 431.386 kb on - strand at 431.398 kb on + strand at 431.420 kb on + strand at 431.438 kb on + strand at 431.446 kb on + strand at 431.446 kb on - strand at 431.643 kb on - strand at 431.699 kb on + strand, within Dsui_0427 at 431.706 kb on + strand, within Dsui_0427 at 431.833 kb on + strand, within Dsui_0427 at 431.892 kb on + strand, within Dsui_0427 at 431.966 kb on + strand, within Dsui_0427 at 432.033 kb on - strand at 432.128 kb on + strand, within Dsui_0427 at 432.321 kb on - strand, within Dsui_0427 at 432.355 kb on - strand, within Dsui_0427 at 432.424 kb on - strand at 432.473 kb on + strand at 432.613 kb on + strand at 432.679 kb on - strand at 432.836 kb on + strand at 432.872 kb on - strand, within Dsui_0428 at 432.991 kb on - strand, within Dsui_0428 at 433.119 kb on + strand, within Dsui_0428 at 433.242 kb on - strand, within Dsui_0428 at 433.277 kb on + strand at 433.287 kb on + strand at 433.306 kb on - strand, within Dsui_0428 at 433.361 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM remove 430,439 + -0.1 430,558 + Dsui_0426 0.19 -2.5 430,575 + Dsui_0426 0.20 -1.1 430,583 - Dsui_0426 0.21 -0.1 430,600 - Dsui_0426 0.23 -0.4 430,652 + Dsui_0426 0.29 -1.1 430,655 - Dsui_0426 0.29 +0.1 430,695 - Dsui_0426 0.34 -0.1 430,700 - Dsui_0426 0.34 -0.3 430,811 - Dsui_0426 0.46 +0.6 430,878 - Dsui_0426 0.54 -0.7 430,883 - Dsui_0426 0.54 -0.2 430,996 - Dsui_0426 0.66 -0.1 431,055 + +0.5 431,182 + Dsui_0426 0.87 -0.5 431,191 - Dsui_0426 0.88 -0.5 431,233 - +0.1 431,254 - +0.5 431,307 - -1.5 431,310 - -0.5 431,386 - +0.5 431,398 + +0.5 431,420 + -1.6 431,438 + -0.4 431,446 + -0.8 431,446 - -0.5 431,643 - -0.5 431,699 + Dsui_0427 0.25 -0.6 431,706 + Dsui_0427 0.26 -1.3 431,833 + Dsui_0427 0.37 -0.9 431,892 + Dsui_0427 0.42 -0.4 431,966 + Dsui_0427 0.49 -0.8 432,033 - +0.5 432,128 + Dsui_0427 0.64 -1.1 432,321 - Dsui_0427 0.81 +0.5 432,355 - Dsui_0427 0.84 -1.1 432,424 - -1.1 432,473 + -1.6 432,613 + +0.5 432,679 - -0.5 432,836 + +0.5 432,872 - Dsui_0428 0.11 -0.0 432,991 - Dsui_0428 0.17 -0.5 433,119 + Dsui_0428 0.24 -0.5 433,242 - Dsui_0428 0.31 -0.8 433,277 + +0.5 433,287 + +0.5 433,306 - Dsui_0428 0.34 -0.4 433,361 + -0.5
Or see this region's nucleotide sequence