Strain Fitness in Dechlorosoma suillum PS around Dsui_0318

Experiment: ALP with nitrate 75 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0317 and Dsui_0318 are separated by 17 nucleotidesDsui_0318 and Dsui_0319 are separated by 16 nucleotides Dsui_0317: Dsui_0317 - acetyl-CoA acetyltransferase, at 318,424 to 319,623 _0317 Dsui_0318: Dsui_0318 - 3-hydroxyacyl-CoA dehydrogenase, at 319,641 to 322,028 _0318 Dsui_0319: Dsui_0319 - acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II, at 322,045 to 323,688 _0319 Position (kb) 319 320 321 322 323Strain fitness (log2 ratio) -2 -1 0 1 2 3at 318.708 kb on - strand, within Dsui_0317at 318.798 kb on + strand, within Dsui_0317at 318.917 kb on + strand, within Dsui_0317at 318.995 kb on + strand, within Dsui_0317at 319.032 kb on + strand, within Dsui_0317at 319.033 kb on - strand, within Dsui_0317at 319.034 kb on - strand, within Dsui_0317at 319.083 kb on + strandat 319.135 kb on - strand, within Dsui_0317at 319.137 kb on + strand, within Dsui_0317at 319.140 kb on - strand, within Dsui_0317at 319.209 kb on + strand, within Dsui_0317at 319.237 kb on - strand, within Dsui_0317at 319.283 kb on - strand, within Dsui_0317at 319.285 kb on + strandat 319.319 kb on + strand, within Dsui_0317at 319.401 kb on - strand, within Dsui_0317at 319.476 kb on + strand, within Dsui_0317at 319.544 kb on + strandat 319.561 kb on - strandat 319.595 kb on + strandat 319.688 kb on - strandat 319.694 kb on - strandat 319.694 kb on - strandat 319.702 kb on + strandat 319.702 kb on + strandat 319.702 kb on + strandat 319.762 kb on + strandat 319.780 kb on - strandat 319.858 kb on - strandat 319.966 kb on - strand, within Dsui_0318at 319.986 kb on + strand, within Dsui_0318at 320.029 kb on + strand, within Dsui_0318at 320.061 kb on - strand, within Dsui_0318at 320.079 kb on + strand, within Dsui_0318at 320.111 kb on - strand, within Dsui_0318at 320.191 kb on - strand, within Dsui_0318at 320.208 kb on - strand, within Dsui_0318at 320.289 kb on - strand, within Dsui_0318at 320.385 kb on - strand, within Dsui_0318at 320.394 kb on + strand, within Dsui_0318at 320.402 kb on - strand, within Dsui_0318at 320.531 kb on + strand, within Dsui_0318at 320.531 kb on + strand, within Dsui_0318at 320.539 kb on - strand, within Dsui_0318at 320.653 kb on + strand, within Dsui_0318at 320.694 kb on - strand, within Dsui_0318at 320.862 kb on - strand, within Dsui_0318at 320.974 kb on + strandat 321.043 kb on + strand, within Dsui_0318at 321.099 kb on - strand, within Dsui_0318at 321.111 kb on + strand, within Dsui_0318at 321.259 kb on + strand, within Dsui_0318at 321.259 kb on + strandat 321.267 kb on - strand, within Dsui_0318at 321.359 kb on - strand, within Dsui_0318at 321.387 kb on + strand, within Dsui_0318at 321.469 kb on - strand, within Dsui_0318at 321.521 kb on + strand, within Dsui_0318at 321.622 kb on + strandat 321.622 kb on + strandat 321.630 kb on - strand, within Dsui_0318at 321.647 kb on + strand, within Dsui_0318at 321.647 kb on + strand, within Dsui_0318at 321.650 kb on - strandat 321.655 kb on - strand, within Dsui_0318at 321.655 kb on - strand, within Dsui_0318at 321.655 kb on - strand, within Dsui_0318at 321.780 kb on + strand, within Dsui_0318at 321.807 kb on - strandat 321.869 kb on - strandat 321.869 kb on - strandat 322.032 kb on + strandat 322.161 kb on + strandat 322.207 kb on - strandat 322.223 kb on + strandat 322.264 kb on - strand, within Dsui_0319at 322.475 kb on - strand, within Dsui_0319at 322.519 kb on - strand, within Dsui_0319at 322.586 kb on - strand, within Dsui_0319at 322.604 kb on + strand, within Dsui_0319at 322.739 kb on + strand, within Dsui_0319at 322.744 kb on + strand, within Dsui_0319at 322.751 kb on + strand, within Dsui_0319at 322.751 kb on + strand, within Dsui_0319at 322.847 kb on - strand, within Dsui_0319at 322.922 kb on - strand, within Dsui_0319at 322.964 kb on + strandat 322.969 kb on + strandat 322.977 kb on - strand, within Dsui_0319

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM
remove
318,708 - Dsui_0317 0.24 -0.4
318,798 + Dsui_0317 0.31 -1.0
318,917 + Dsui_0317 0.41 -1.4
318,995 + Dsui_0317 0.48 -1.0
319,032 + Dsui_0317 0.51 -1.8
319,033 - Dsui_0317 0.51 -2.4
319,034 - Dsui_0317 0.51 -1.0
319,083 + +0.6
319,135 - Dsui_0317 0.59 -0.9
319,137 + Dsui_0317 0.59 -2.4
319,140 - Dsui_0317 0.60 -1.0
319,209 + Dsui_0317 0.65 +0.6
319,237 - Dsui_0317 0.68 +0.9
319,283 - Dsui_0317 0.72 -0.4
319,285 + +0.6
319,319 + Dsui_0317 0.75 -2.4
319,401 - Dsui_0317 0.81 +1.0
319,476 + Dsui_0317 0.88 -1.0
319,544 + -1.4
319,561 - -0.2
319,595 + -1.0
319,688 - -1.0
319,694 - +0.6
319,694 - -2.0
319,702 + +0.6
319,702 + -0.4
319,702 + -1.0
319,762 + +0.6
319,780 - -0.2
319,858 - -1.3
319,966 - Dsui_0318 0.14 -2.1
319,986 + Dsui_0318 0.14 +0.6
320,029 + Dsui_0318 0.16 +0.6
320,061 - Dsui_0318 0.18 -0.4
320,079 + Dsui_0318 0.18 +0.6
320,111 - Dsui_0318 0.20 -0.3
320,191 - Dsui_0318 0.23 -1.2
320,208 - Dsui_0318 0.24 +0.4
320,289 - Dsui_0318 0.27 +0.4
320,385 - Dsui_0318 0.31 -0.2
320,394 + Dsui_0318 0.32 -2.0
320,402 - Dsui_0318 0.32 -0.8
320,531 + Dsui_0318 0.37 -0.4
320,531 + Dsui_0318 0.37 -1.0
320,539 - Dsui_0318 0.38 -0.1
320,653 + Dsui_0318 0.42 -0.4
320,694 - Dsui_0318 0.44 -0.8
320,862 - Dsui_0318 0.51 -0.9
320,974 + +0.6
321,043 + Dsui_0318 0.59 -2.4
321,099 - Dsui_0318 0.61 +2.9
321,111 + Dsui_0318 0.62 -1.4
321,259 + Dsui_0318 0.68 +0.6
321,259 + +0.6
321,267 - Dsui_0318 0.68 -1.4
321,359 - Dsui_0318 0.72 -0.4
321,387 + Dsui_0318 0.73 +0.6
321,469 - Dsui_0318 0.77 -0.8
321,521 + Dsui_0318 0.79 +0.6
321,622 + +0.6
321,622 + +0.6
321,630 - Dsui_0318 0.83 -0.9
321,647 + Dsui_0318 0.84 +0.6
321,647 + Dsui_0318 0.84 -0.4
321,650 - -0.4
321,655 - Dsui_0318 0.84 -1.0
321,655 - Dsui_0318 0.84 -0.5
321,655 - Dsui_0318 0.84 -1.0
321,780 + Dsui_0318 0.90 -1.0
321,807 - -0.8
321,869 - -0.8
321,869 - -0.5
322,032 + +0.6
322,161 + -0.4
322,207 - +0.6
322,223 + +0.6
322,264 - Dsui_0319 0.13 +0.6
322,475 - Dsui_0319 0.26 +0.6
322,519 - Dsui_0319 0.29 +0.6
322,586 - Dsui_0319 0.33 -0.4
322,604 + Dsui_0319 0.34 +0.6
322,739 + Dsui_0319 0.42 -2.4
322,744 + Dsui_0319 0.43 +0.6
322,751 + Dsui_0319 0.43 -2.0
322,751 + Dsui_0319 0.43 -0.4
322,847 - Dsui_0319 0.49 -1.0
322,922 - Dsui_0319 0.53 -1.8
322,964 + -0.4
322,969 + +0.6
322,977 - Dsui_0319 0.57 -1.0

Or see this region's nucleotide sequence