Strain Fitness in Dechlorosoma suillum PS around Dsui_0183

Experiment: ALP with nitrate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0182 and Dsui_0183 are separated by 2 nucleotidesDsui_0183 and Dsui_0184 are separated by 187 nucleotidesDsui_0184 and Dsui_0185 are separated by 30 nucleotidesDsui_0185 and Dsui_0186 are separated by 23 nucleotides Dsui_0182: Dsui_0182 - hypothetical protein, at 183,690 to 184,331 _0182 Dsui_0183: Dsui_0183 - SOS response transcriptional repressor, RecA-mediated autopeptidase, at 184,334 to 184,930 _0183 Dsui_0184: Dsui_0184 - putative transcriptional regulator, at 185,118 to 185,351 _0184 Dsui_0185: Dsui_0185 - hypothetical protein, at 185,382 to 185,846 _0185 Dsui_0186: Dsui_0186 - DNA/RNA helicase, superfamily II, SNF2 family, at 185,870 to 188,398 _0186 Position (kb) 184 185Strain fitness (log2 ratio) -2 -1 0 1at 183.336 kb on + strandat 183.344 kb on - strandat 183.428 kb on - strandat 183.501 kb on + strandat 183.540 kb on + strandat 183.545 kb on + strandat 183.590 kb on - strandat 183.619 kb on - strandat 183.622 kb on + strandat 183.634 kb on + strandat 183.743 kb on - strandat 183.743 kb on - strandat 183.762 kb on - strand, within Dsui_0182at 183.768 kb on - strand, within Dsui_0182at 183.768 kb on - strand, within Dsui_0182at 183.773 kb on - strand, within Dsui_0182at 183.786 kb on + strand, within Dsui_0182at 183.848 kb on - strand, within Dsui_0182at 183.861 kb on + strand, within Dsui_0182at 183.863 kb on + strand, within Dsui_0182at 183.936 kb on + strand, within Dsui_0182at 183.947 kb on - strand, within Dsui_0182at 183.994 kb on + strand, within Dsui_0182at 183.997 kb on - strand, within Dsui_0182at 184.014 kb on + strand, within Dsui_0182at 184.022 kb on - strand, within Dsui_0182at 184.066 kb on + strand, within Dsui_0182at 184.066 kb on + strand, within Dsui_0182at 184.067 kb on + strand, within Dsui_0182at 184.067 kb on + strand, within Dsui_0182at 184.075 kb on - strand, within Dsui_0182at 184.108 kb on - strand, within Dsui_0182at 184.145 kb on + strand, within Dsui_0182at 184.179 kb on - strand, within Dsui_0182at 184.341 kb on - strandat 185.099 kb on - strandat 185.108 kb on - strandat 185.161 kb on - strand, within Dsui_0184at 185.270 kb on - strand, within Dsui_0184at 185.397 kb on + strandat 185.510 kb on - strand, within Dsui_0185at 185.554 kb on - strand, within Dsui_0185at 185.592 kb on - strand, within Dsui_0185at 185.665 kb on + strand, within Dsui_0185at 185.776 kb on + strand, within Dsui_0185at 185.843 kb on - strandat 185.843 kb on - strandat 185.843 kb on - strandat 185.848 kb on - strandat 185.885 kb on - strandat 185.898 kb on - strandat 185.907 kb on + strandat 185.907 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM
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183,336 + +0.6
183,344 - -0.0
183,428 - +0.1
183,501 + -2.4
183,540 + -1.4
183,545 + +0.6
183,590 - -0.3
183,619 - +0.0
183,622 + -0.4
183,634 + -1.0
183,743 - +0.0
183,743 - -0.3
183,762 - Dsui_0182 0.11 +0.0
183,768 - Dsui_0182 0.12 -0.1
183,768 - Dsui_0182 0.12 -0.1
183,773 - Dsui_0182 0.13 +0.2
183,786 + Dsui_0182 0.15 -1.7
183,848 - Dsui_0182 0.25 +0.1
183,861 + Dsui_0182 0.27 +0.6
183,863 + Dsui_0182 0.27 +0.6
183,936 + Dsui_0182 0.38 -1.0
183,947 - Dsui_0182 0.40 +0.1
183,994 + Dsui_0182 0.47 -0.4
183,997 - Dsui_0182 0.48 -0.3
184,014 + Dsui_0182 0.50 -0.4
184,022 - Dsui_0182 0.52 +0.1
184,066 + Dsui_0182 0.59 +0.6
184,066 + Dsui_0182 0.59 -2.4
184,067 + Dsui_0182 0.59 -2.7
184,067 + Dsui_0182 0.59 -1.4
184,075 - Dsui_0182 0.60 +0.2
184,108 - Dsui_0182 0.65 -0.3
184,145 + Dsui_0182 0.71 -1.4
184,179 - Dsui_0182 0.76 +0.0
184,341 - -0.2
185,099 - +0.6
185,108 - -1.7
185,161 - Dsui_0184 0.18 +0.6
185,270 - Dsui_0184 0.65 +0.6
185,397 + +0.6
185,510 - Dsui_0185 0.28 -0.4
185,554 - Dsui_0185 0.37 +0.6
185,592 - Dsui_0185 0.45 -1.0
185,665 + Dsui_0185 0.61 +0.6
185,776 + Dsui_0185 0.85 -0.4
185,843 - +0.6
185,843 - -0.4
185,843 - -0.4
185,848 - -0.4
185,885 - -0.4
185,898 - +0.6
185,907 + +0.6
185,907 + +0.6

Or see this region's nucleotide sequence