Strain Fitness in Dechlorosoma suillum PS around Dsui_0132

Experiment: ALP with nitrate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0131 and Dsui_0132 are separated by 101 nucleotidesDsui_0132 and Dsui_0133 are separated by 145 nucleotides Dsui_0131: Dsui_0131 - phosphoenolpyruvate carboxykinase (GTP), at 131,185 to 133,044 _0131 Dsui_0132: Dsui_0132 - aspartate/tyrosine/aromatic aminotransferase, at 133,146 to 134,303 _0132 Dsui_0133: Dsui_0133 - hypothetical protein, at 134,449 to 135,519 _0133 Position (kb) 133 134 135Strain fitness (log2 ratio) -2 -1 0 1at 132.247 kb on + strand, within Dsui_0131at 132.247 kb on + strand, within Dsui_0131at 132.255 kb on - strand, within Dsui_0131at 132.275 kb on + strand, within Dsui_0131at 132.278 kb on - strand, within Dsui_0131at 132.283 kb on - strand, within Dsui_0131at 132.335 kb on - strand, within Dsui_0131at 132.353 kb on - strand, within Dsui_0131at 132.485 kb on + strand, within Dsui_0131at 132.526 kb on + strand, within Dsui_0131at 132.532 kb on - strand, within Dsui_0131at 132.539 kb on + strand, within Dsui_0131at 132.839 kb on - strand, within Dsui_0131at 133.024 kb on - strandat 133.026 kb on + strandat 133.026 kb on + strandat 133.034 kb on - strandat 133.107 kb on + strandat 133.114 kb on + strandat 133.122 kb on - strandat 133.122 kb on - strandat 133.200 kb on - strandat 133.257 kb on - strandat 133.339 kb on + strand, within Dsui_0132at 133.339 kb on + strand, within Dsui_0132at 133.344 kb on + strand, within Dsui_0132at 133.352 kb on - strand, within Dsui_0132at 133.353 kb on - strand, within Dsui_0132at 133.467 kb on - strand, within Dsui_0132at 133.472 kb on - strand, within Dsui_0132at 133.554 kb on - strandat 133.622 kb on + strand, within Dsui_0132at 133.622 kb on + strand, within Dsui_0132at 133.649 kb on + strand, within Dsui_0132at 133.650 kb on + strand, within Dsui_0132at 133.684 kb on + strand, within Dsui_0132at 133.685 kb on + strand, within Dsui_0132at 133.822 kb on - strand, within Dsui_0132at 133.835 kb on - strand, within Dsui_0132at 133.840 kb on - strand, within Dsui_0132at 133.885 kb on + strandat 133.895 kb on - strand, within Dsui_0132at 133.895 kb on - strand, within Dsui_0132at 133.961 kb on - strand, within Dsui_0132at 133.998 kb on - strand, within Dsui_0132at 134.049 kb on - strandat 134.095 kb on - strand, within Dsui_0132at 134.106 kb on - strand, within Dsui_0132at 134.140 kb on + strand, within Dsui_0132at 134.243 kb on + strandat 134.264 kb on + strandat 134.305 kb on - strandat 134.319 kb on + strandat 134.352 kb on - strandat 134.412 kb on + strandat 134.412 kb on + strandat 134.414 kb on - strandat 134.514 kb on - strandat 134.587 kb on + strand, within Dsui_0133at 134.590 kb on - strand, within Dsui_0133at 134.626 kb on - strand, within Dsui_0133

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM
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132,247 + Dsui_0131 0.57 +0.2
132,247 + Dsui_0131 0.57 -0.3
132,255 - Dsui_0131 0.58 +0.6
132,275 + Dsui_0131 0.59 +0.1
132,278 - Dsui_0131 0.59 +0.6
132,283 - Dsui_0131 0.59 +0.6
132,335 - Dsui_0131 0.62 +0.6
132,353 - Dsui_0131 0.63 +0.6
132,485 + Dsui_0131 0.70 +0.2
132,526 + Dsui_0131 0.72 +0.3
132,532 - Dsui_0131 0.72 -1.4
132,539 + Dsui_0131 0.73 +0.1
132,839 - Dsui_0131 0.89 +0.6
133,024 - -1.0
133,026 + +0.3
133,026 + +0.1
133,034 - +0.6
133,107 + +0.6
133,114 + -0.2
133,122 - +0.6
133,122 - -1.0
133,200 - +0.6
133,257 - -1.7
133,339 + Dsui_0132 0.17 -1.7
133,339 + Dsui_0132 0.17 -0.7
133,344 + Dsui_0132 0.17 -0.4
133,352 - Dsui_0132 0.18 +0.6
133,353 - Dsui_0132 0.18 -1.4
133,467 - Dsui_0132 0.28 -1.0
133,472 - Dsui_0132 0.28 -2.2
133,554 - +0.6
133,622 + Dsui_0132 0.41 -1.4
133,622 + Dsui_0132 0.41 -1.7
133,649 + Dsui_0132 0.43 -1.7
133,650 + Dsui_0132 0.44 -1.8
133,684 + Dsui_0132 0.46 -0.7
133,685 + Dsui_0132 0.47 -1.5
133,822 - Dsui_0132 0.58 -1.4
133,835 - Dsui_0132 0.59 -1.0
133,840 - Dsui_0132 0.60 -1.0
133,885 + +0.6
133,895 - Dsui_0132 0.65 +0.6
133,895 - Dsui_0132 0.65 +0.6
133,961 - Dsui_0132 0.70 +0.6
133,998 - Dsui_0132 0.74 -1.0
134,049 - -0.4
134,095 - Dsui_0132 0.82 -1.0
134,106 - Dsui_0132 0.83 -0.4
134,140 + Dsui_0132 0.86 -1.0
134,243 + -1.7
134,264 + -1.2
134,305 - +0.6
134,319 + +0.6
134,352 - -2.0
134,412 + -2.0
134,412 + -1.0
134,414 - +0.0
134,514 - -0.4
134,587 + Dsui_0133 0.13 -1.4
134,590 - Dsui_0133 0.13 -0.2
134,626 - Dsui_0133 0.17 +0.3

Or see this region's nucleotide sequence