Experiment: ALP with nitrate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0032 and Dsui_0033 are separated by 90 nucleotides Dsui_0033 and Dsui_0034 are separated by 93 nucleotides
Dsui_0032: Dsui_0032 - NAD-dependent protein deacetylase, SIR2 family, at 28,265 to 29,095
_0032
Dsui_0033: Dsui_0033 - Zn-dependent protease with chaperone function, at 29,186 to 30,007
_0033
Dsui_0034: Dsui_0034 - flagellar capping protein, at 30,101 to 31,537
_0034
Position (kb) 29
30
31 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 28.225 kb on + strand at 28.273 kb on + strand at 28.284 kb on + strand at 28.326 kb on - strand at 28.350 kb on + strand at 28.398 kb on + strand, within Dsui_0032 at 28.474 kb on + strand, within Dsui_0032 at 28.477 kb on - strand at 28.685 kb on - strand at 28.694 kb on + strand at 28.893 kb on + strand, within Dsui_0032 at 28.967 kb on + strand at 28.975 kb on - strand, within Dsui_0032 at 28.999 kb on + strand at 29.007 kb on - strand, within Dsui_0032 at 29.007 kb on - strand at 29.024 kb on - strand at 29.107 kb on - strand at 29.107 kb on - strand at 29.157 kb on - strand at 29.280 kb on - strand at 29.299 kb on + strand, within Dsui_0033 at 29.458 kb on + strand, within Dsui_0033 at 29.507 kb on - strand at 29.600 kb on + strand, within Dsui_0033 at 29.718 kb on + strand, within Dsui_0033 at 29.864 kb on + strand, within Dsui_0033 at 29.951 kb on - strand at 30.106 kb on - strand at 30.123 kb on + strand at 30.172 kb on + strand at 30.175 kb on - strand at 30.219 kb on - strand at 30.277 kb on - strand, within Dsui_0034 at 30.316 kb on - strand, within Dsui_0034 at 30.327 kb on - strand at 30.409 kb on - strand, within Dsui_0034 at 30.481 kb on - strand, within Dsui_0034 at 30.800 kb on + strand, within Dsui_0034 at 30.808 kb on - strand, within Dsui_0034 at 30.947 kb on + strand, within Dsui_0034 at 30.968 kb on + strand, within Dsui_0034
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM remove 28,225 + -0.4 28,273 + -0.4 28,284 + -1.0 28,326 - +0.6 28,350 + +0.6 28,398 + Dsui_0032 0.16 +0.6 28,474 + Dsui_0032 0.25 -1.0 28,477 - +0.6 28,685 - -1.0 28,694 + +0.6 28,893 + Dsui_0032 0.76 +1.6 28,967 + +0.6 28,975 - Dsui_0032 0.85 -1.4 28,999 + -0.4 29,007 - Dsui_0032 0.89 -1.4 29,007 - +0.6 29,024 - +0.6 29,107 - -0.4 29,107 - +0.6 29,157 - -1.4 29,280 - -1.0 29,299 + Dsui_0033 0.14 -1.0 29,458 + Dsui_0033 0.33 +0.6 29,507 - +0.6 29,600 + Dsui_0033 0.50 -2.7 29,718 + Dsui_0033 0.65 -2.8 29,864 + Dsui_0033 0.82 -1.5 29,951 - -0.4 30,106 - -1.0 30,123 + +0.6 30,172 + -2.0 30,175 - -1.0 30,219 - -1.0 30,277 - Dsui_0034 0.12 +0.6 30,316 - Dsui_0034 0.15 -2.2 30,327 - +0.6 30,409 - Dsui_0034 0.21 +0.6 30,481 - Dsui_0034 0.26 -1.4 30,800 + Dsui_0034 0.49 -0.4 30,808 - Dsui_0034 0.49 -0.4 30,947 + Dsui_0034 0.59 -0.4 30,968 + Dsui_0034 0.60 -0.4
Or see this region's nucleotide sequence