Strain Fitness in Dechlorosoma suillum PS around Dsui_0012

Experiment: ALP with nitrate 75 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0011 and Dsui_0012 are separated by 221 nucleotidesDsui_0012 and Dsui_0013 are separated by 1 nucleotidesDsui_0013 and Dsui_0014 are separated by 496 nucleotides Dsui_0011: Dsui_0011 - isocitrate lyase, at 9,345 to 10,655 _0011 Dsui_0012: Dsui_0012 - putative permease, DMT superfamily, at 10,877 to 11,764 _0012 Dsui_0013: Dsui_0013 - Thioredoxin, at 11,766 to 12,266 _0013 Dsui_0014: Dsui_0014 - putative membrane protein, at 12,763 to 13,377 _0014 Position (kb) 10 11 12Strain fitness (log2 ratio) -3 -2 -1 0 1at 9.928 kb on + strand, within Dsui_0011at 9.965 kb on - strand, within Dsui_0011at 10.018 kb on - strand, within Dsui_0011at 10.018 kb on - strand, within Dsui_0011at 10.035 kb on - strand, within Dsui_0011at 10.040 kb on - strand, within Dsui_0011at 10.057 kb on + strand, within Dsui_0011at 10.065 kb on - strand, within Dsui_0011at 10.150 kb on + strand, within Dsui_0011at 10.158 kb on - strand, within Dsui_0011at 10.258 kb on - strand, within Dsui_0011at 10.258 kb on - strand, within Dsui_0011at 10.297 kb on - strand, within Dsui_0011at 10.371 kb on + strand, within Dsui_0011at 10.432 kb on + strand, within Dsui_0011at 10.456 kb on - strand, within Dsui_0011at 10.456 kb on - strand, within Dsui_0011at 10.467 kb on + strand, within Dsui_0011at 10.531 kb on - strandat 10.614 kb on - strandat 10.625 kb on - strandat 10.625 kb on - strandat 10.690 kb on - strandat 10.748 kb on - strandat 10.773 kb on + strandat 10.773 kb on - strandat 10.781 kb on - strandat 10.781 kb on - strandat 10.781 kb on - strandat 10.781 kb on - strandat 10.781 kb on - strandat 10.781 kb on - strandat 10.833 kb on - strandat 10.854 kb on + strandat 10.867 kb on + strandat 10.867 kb on + strandat 10.875 kb on - strandat 11.015 kb on - strand, within Dsui_0012at 11.021 kb on - strandat 11.045 kb on + strand, within Dsui_0012at 11.105 kb on - strand, within Dsui_0012at 11.110 kb on - strand, within Dsui_0012at 11.163 kb on - strand, within Dsui_0012at 11.255 kb on - strand, within Dsui_0012at 11.267 kb on - strand, within Dsui_0012at 11.274 kb on - strand, within Dsui_0012at 11.343 kb on + strand, within Dsui_0012at 11.408 kb on + strand, within Dsui_0012at 11.428 kb on - strand, within Dsui_0012at 11.434 kb on + strand, within Dsui_0012at 11.471 kb on + strand, within Dsui_0012at 11.524 kb on - strandat 11.536 kb on + strand, within Dsui_0012at 11.536 kb on + strand, within Dsui_0012at 11.547 kb on + strand, within Dsui_0012at 11.550 kb on - strand, within Dsui_0012at 11.598 kb on + strand, within Dsui_0012at 11.610 kb on - strandat 11.610 kb on - strand, within Dsui_0012at 11.666 kb on - strand, within Dsui_0012at 11.676 kb on + strandat 11.714 kb on + strandat 11.727 kb on - strandat 11.759 kb on + strandat 11.767 kb on - strandat 11.772 kb on - strandat 11.951 kb on + strandat 11.983 kb on - strand, within Dsui_0013at 12.306 kb on + strandat 12.374 kb on + strandat 12.604 kb on - strandat 12.609 kb on - strandat 12.711 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrate 75 mM
remove
9,928 + Dsui_0011 0.44 -0.4
9,965 - Dsui_0011 0.47 +0.6
10,018 - Dsui_0011 0.51 -1.4
10,018 - Dsui_0011 0.51 -1.0
10,035 - Dsui_0011 0.53 +0.6
10,040 - Dsui_0011 0.53 -0.4
10,057 + Dsui_0011 0.54 -0.4
10,065 - Dsui_0011 0.55 +0.6
10,150 + Dsui_0011 0.61 -0.4
10,158 - Dsui_0011 0.62 -1.7
10,258 - Dsui_0011 0.70 -1.0
10,258 - Dsui_0011 0.70 +0.6
10,297 - Dsui_0011 0.73 -1.0
10,371 + Dsui_0011 0.78 -3.4
10,432 + Dsui_0011 0.83 -2.5
10,456 - Dsui_0011 0.85 +0.6
10,456 - Dsui_0011 0.85 +0.6
10,467 + Dsui_0011 0.86 -2.7
10,531 - -2.7
10,614 - +0.6
10,625 - -1.4
10,625 - +0.6
10,690 - -0.4
10,748 - +0.6
10,773 + +1.4
10,773 - +0.6
10,781 - -0.4
10,781 - +0.6
10,781 - +0.6
10,781 - +0.6
10,781 - +0.6
10,781 - +0.6
10,833 - -1.0
10,854 + +0.0
10,867 + -0.4
10,867 + -1.5
10,875 - +0.6
11,015 - Dsui_0012 0.16 -1.0
11,021 - +0.6
11,045 + Dsui_0012 0.19 -1.2
11,105 - Dsui_0012 0.26 -1.7
11,110 - Dsui_0012 0.26 -1.4
11,163 - Dsui_0012 0.32 -2.5
11,255 - Dsui_0012 0.43 -1.0
11,267 - Dsui_0012 0.44 +0.6
11,274 - Dsui_0012 0.45 +0.6
11,343 + Dsui_0012 0.52 +0.3
11,408 + Dsui_0012 0.60 -0.2
11,428 - Dsui_0012 0.62 -2.2
11,434 + Dsui_0012 0.63 -0.9
11,471 + Dsui_0012 0.67 -0.8
11,524 - -0.4
11,536 + Dsui_0012 0.74 -3.0
11,536 + Dsui_0012 0.74 -1.8
11,547 + Dsui_0012 0.75 +0.2
11,550 - Dsui_0012 0.76 +0.6
11,598 + Dsui_0012 0.81 -1.2
11,610 - -0.4
11,610 - Dsui_0012 0.83 -0.4
11,666 - Dsui_0012 0.89 -1.0
11,676 + -0.0
11,714 + -0.7
11,727 - -2.7
11,759 + -0.4
11,767 - +1.0
11,772 - -0.1
11,951 + +0.6
11,983 - Dsui_0013 0.43 +0.2
12,306 + +0.6
12,374 + +0.6
12,604 - +0.6
12,609 - -2.2
12,711 - -0.4

Or see this region's nucleotide sequence