Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12045

Experiment: Adenosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12025 and BWI76_RS12030 overlap by 104 nucleotidesBWI76_RS12030 and BWI76_RS12035 are separated by 9 nucleotidesBWI76_RS12035 and BWI76_RS12040 are separated by 7 nucleotidesBWI76_RS12040 and BWI76_RS12045 overlap by 4 nucleotidesBWI76_RS12045 and BWI76_RS12050 overlap by 8 nucleotidesBWI76_RS12050 and BWI76_RS12055 are separated by 34 nucleotides BWI76_RS12025: BWI76_RS12025 - integrase, at 2,529,969 to 2,531,198 _RS12025 BWI76_RS12030: BWI76_RS12030 - hypothetical protein, at 2,531,095 to 2,531,409 _RS12030 BWI76_RS12035: BWI76_RS12035 - hypothetical protein, at 2,531,419 to 2,531,658 _RS12035 BWI76_RS12040: BWI76_RS12040 - hypothetical protein, at 2,531,666 to 2,531,974 _RS12040 BWI76_RS12045: BWI76_RS12045 - hypothetical protein, at 2,531,971 to 2,532,690 _RS12045 BWI76_RS12050: BWI76_RS12050 - hypothetical protein, at 2,532,683 to 2,533,036 _RS12050 BWI76_RS12055: BWI76_RS12055 - DNA single-strand annealing protein RecT-like protein, at 2,533,071 to 2,534,180 _RS12055 Position (kb) 2531 2532 2533Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2531.006 kb on - strand, within BWI76_RS12025at 2531.085 kb on - strandat 2531.104 kb on + strandat 2531.143 kb on + strandat 2531.149 kb on + strandat 2531.151 kb on - strandat 2531.152 kb on - strandat 2531.226 kb on + strand, within BWI76_RS12030at 2531.234 kb on - strandat 2531.313 kb on - strand, within BWI76_RS12030at 2531.423 kb on - strandat 2531.461 kb on + strand, within BWI76_RS12035at 2531.461 kb on + strand, within BWI76_RS12035at 2531.461 kb on + strand, within BWI76_RS12035at 2531.469 kb on - strand, within BWI76_RS12035at 2531.469 kb on - strand, within BWI76_RS12035at 2531.469 kb on - strand, within BWI76_RS12035at 2531.708 kb on + strand, within BWI76_RS12040at 2531.983 kb on + strandat 2532.114 kb on - strand, within BWI76_RS12045at 2532.233 kb on + strand, within BWI76_RS12045at 2532.627 kb on + strandat 2532.627 kb on + strandat 2532.642 kb on + strandat 2532.645 kb on - strandat 2532.869 kb on + strand, within BWI76_RS12050at 2532.877 kb on - strand, within BWI76_RS12050at 2532.937 kb on + strand, within BWI76_RS12050at 2532.956 kb on - strandat 2532.989 kb on - strand, within BWI76_RS12050at 2533.106 kb on - strandat 2533.276 kb on + strand, within BWI76_RS12055at 2533.531 kb on - strand, within BWI76_RS12055at 2533.662 kb on - strand, within BWI76_RS12055

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (C)
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2,531,006 - BWI76_RS12025 0.84 -0.4
2,531,085 - -0.0
2,531,104 + -1.2
2,531,143 + -0.0
2,531,149 + +0.3
2,531,151 - -1.5
2,531,152 - +0.3
2,531,226 + BWI76_RS12030 0.42 +0.4
2,531,234 - -0.4
2,531,313 - BWI76_RS12030 0.69 -0.2
2,531,423 - -0.5
2,531,461 + BWI76_RS12035 0.17 +0.8
2,531,461 + BWI76_RS12035 0.17 -0.4
2,531,461 + BWI76_RS12035 0.17 -0.3
2,531,469 - BWI76_RS12035 0.21 +0.2
2,531,469 - BWI76_RS12035 0.21 +0.0
2,531,469 - BWI76_RS12035 0.21 -0.1
2,531,708 + BWI76_RS12040 0.14 +0.9
2,531,983 + +0.5
2,532,114 - BWI76_RS12045 0.20 -2.5
2,532,233 + BWI76_RS12045 0.36 -0.8
2,532,627 + -1.0
2,532,627 + -0.3
2,532,642 + +0.9
2,532,645 - -0.6
2,532,869 + BWI76_RS12050 0.53 +0.9
2,532,877 - BWI76_RS12050 0.55 -0.3
2,532,937 + BWI76_RS12050 0.72 -0.0
2,532,956 - +3.2
2,532,989 - BWI76_RS12050 0.86 -0.9
2,533,106 - -1.2
2,533,276 + BWI76_RS12055 0.18 +0.1
2,533,531 - BWI76_RS12055 0.41 +1.2
2,533,662 - BWI76_RS12055 0.53 -0.5

Or see this region's nucleotide sequence