Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_29275

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_29265 and AO353_29270 are separated by 492 nucleotidesAO353_29270 and AO353_29275 overlap by 8 nucleotidesAO353_29275 and AO353_29280 are separated by 15 nucleotidesAO353_29280 and AO353_29285 are separated by 37 nucleotides AO353_29265: AO353_29265 - GCN5 family acetyltransferase, at 6,358,698 to 6,359,165 _29265 AO353_29270: AO353_29270 - type VI secretion system protein, at 6,359,658 to 6,360,158 _29270 AO353_29275: AO353_29275 - hypothetical protein, at 6,360,151 to 6,360,855 _29275 AO353_29280: AO353_29280 - hypothetical protein, at 6,360,871 to 6,361,350 _29280 AO353_29285: AO353_29285 - XRE family transcriptional regulator, at 6,361,388 to 6,361,936 _29285 Position (kb) 6360 6361Strain fitness (log2 ratio) -3 -2 -1 0 1at 6359.200 kb on + strandat 6359.200 kb on + strandat 6359.200 kb on + strandat 6359.201 kb on - strandat 6359.201 kb on - strandat 6359.201 kb on - strandat 6359.236 kb on - strandat 6359.239 kb on + strandat 6359.239 kb on + strandat 6359.239 kb on + strandat 6359.240 kb on - strandat 6359.240 kb on - strandat 6359.240 kb on - strandat 6359.240 kb on - strandat 6359.252 kb on - strandat 6359.322 kb on - strandat 6359.322 kb on - strandat 6359.322 kb on - strandat 6359.322 kb on - strandat 6359.379 kb on - strandat 6359.453 kb on + strandat 6359.477 kb on - strandat 6359.477 kb on - strandat 6359.494 kb on - strandat 6359.503 kb on + strandat 6359.504 kb on - strandat 6359.504 kb on - strandat 6359.569 kb on - strandat 6359.657 kb on + strandat 6359.658 kb on - strandat 6359.729 kb on - strand, within AO353_29270at 6359.729 kb on - strand, within AO353_29270at 6359.877 kb on - strand, within AO353_29270at 6359.877 kb on - strand, within AO353_29270at 6359.977 kb on - strand, within AO353_29270at 6360.042 kb on + strand, within AO353_29270at 6360.043 kb on - strand, within AO353_29270at 6360.044 kb on + strand, within AO353_29270at 6360.045 kb on - strand, within AO353_29270at 6360.045 kb on - strand, within AO353_29270at 6360.045 kb on - strand, within AO353_29270at 6360.071 kb on - strand, within AO353_29270at 6360.129 kb on + strandat 6360.129 kb on + strandat 6360.130 kb on - strandat 6360.131 kb on + strandat 6360.132 kb on - strandat 6360.134 kb on + strandat 6360.223 kb on - strand, within AO353_29275at 6360.241 kb on + strand, within AO353_29275at 6360.300 kb on + strand, within AO353_29275at 6360.321 kb on + strand, within AO353_29275at 6360.322 kb on - strand, within AO353_29275at 6360.322 kb on - strand, within AO353_29275at 6360.394 kb on + strand, within AO353_29275at 6360.482 kb on + strand, within AO353_29275at 6360.482 kb on + strand, within AO353_29275at 6360.483 kb on - strand, within AO353_29275at 6360.520 kb on - strand, within AO353_29275at 6360.526 kb on + strand, within AO353_29275at 6360.526 kb on + strand, within AO353_29275at 6360.527 kb on - strand, within AO353_29275at 6360.543 kb on + strand, within AO353_29275at 6360.547 kb on + strand, within AO353_29275at 6360.547 kb on + strand, within AO353_29275at 6360.548 kb on - strand, within AO353_29275at 6360.548 kb on - strand, within AO353_29275at 6360.548 kb on - strand, within AO353_29275at 6360.620 kb on - strand, within AO353_29275at 6360.630 kb on + strand, within AO353_29275at 6360.637 kb on + strand, within AO353_29275at 6360.656 kb on - strand, within AO353_29275at 6360.660 kb on - strand, within AO353_29275at 6360.660 kb on - strand, within AO353_29275at 6360.664 kb on - strand, within AO353_29275at 6361.065 kb on + strand, within AO353_29280at 6361.071 kb on - strand, within AO353_29280at 6361.154 kb on + strand, within AO353_29280at 6361.155 kb on - strand, within AO353_29280at 6361.156 kb on + strand, within AO353_29280at 6361.157 kb on - strand, within AO353_29280at 6361.158 kb on + strand, within AO353_29280at 6361.236 kb on - strand, within AO353_29280at 6361.258 kb on - strand, within AO353_29280at 6361.329 kb on + strandat 6361.329 kb on + strandat 6361.406 kb on - strandat 6361.476 kb on + strand, within AO353_29285at 6361.476 kb on + strand, within AO353_29285at 6361.476 kb on + strand, within AO353_29285at 6361.504 kb on + strand, within AO353_29285at 6361.611 kb on + strand, within AO353_29285at 6361.612 kb on - strand, within AO353_29285at 6361.719 kb on + strand, within AO353_29285at 6361.719 kb on + strandat 6361.719 kb on + strand, within AO353_29285at 6361.719 kb on + strand, within AO353_29285at 6361.719 kb on + strand, within AO353_29285at 6361.719 kb on + strand, within AO353_29285at 6361.719 kb on + strand, within AO353_29285at 6361.719 kb on + strand, within AO353_29285at 6361.720 kb on - strand, within AO353_29285at 6361.720 kb on - strand, within AO353_29285at 6361.720 kb on - strand, within AO353_29285at 6361.720 kb on - strand, within AO353_29285at 6361.720 kb on - strand, within AO353_29285at 6361.720 kb on - strand, within AO353_29285at 6361.720 kb on - strand, within AO353_29285at 6361.720 kb on - strand, within AO353_29285at 6361.720 kb on - strand, within AO353_29285

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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6,359,200 + -0.7
6,359,200 + -0.6
6,359,200 + +0.4
6,359,201 - -0.9
6,359,201 - +0.1
6,359,201 - +0.7
6,359,236 - +1.1
6,359,239 + -2.1
6,359,239 + +0.2
6,359,239 + -1.0
6,359,240 - +0.6
6,359,240 - -0.4
6,359,240 - -1.8
6,359,240 - -0.1
6,359,252 - +0.1
6,359,322 - -0.3
6,359,322 - +0.4
6,359,322 - +0.9
6,359,322 - -0.0
6,359,379 - +0.4
6,359,453 + -1.6
6,359,477 - -0.9
6,359,477 - +0.8
6,359,494 - +0.3
6,359,503 + +0.7
6,359,504 - +0.9
6,359,504 - -2.9
6,359,569 - +0.3
6,359,657 + +0.2
6,359,658 - -1.7
6,359,729 - AO353_29270 0.14 -1.1
6,359,729 - AO353_29270 0.14 +0.4
6,359,877 - AO353_29270 0.44 -0.3
6,359,877 - AO353_29270 0.44 +0.8
6,359,977 - AO353_29270 0.64 +0.6
6,360,042 + AO353_29270 0.77 -0.9
6,360,043 - AO353_29270 0.77 +0.7
6,360,044 + AO353_29270 0.77 -1.5
6,360,045 - AO353_29270 0.77 -0.0
6,360,045 - AO353_29270 0.77 -1.3
6,360,045 - AO353_29270 0.77 -0.4
6,360,071 - AO353_29270 0.82 -0.9
6,360,129 + -0.2
6,360,129 + +1.6
6,360,130 - +1.2
6,360,131 + -0.4
6,360,132 - -0.2
6,360,134 + +1.1
6,360,223 - AO353_29275 0.10 -1.3
6,360,241 + AO353_29275 0.13 +0.1
6,360,300 + AO353_29275 0.21 -0.6
6,360,321 + AO353_29275 0.24 +0.1
6,360,322 - AO353_29275 0.24 -1.4
6,360,322 - AO353_29275 0.24 -0.1
6,360,394 + AO353_29275 0.34 -0.9
6,360,482 + AO353_29275 0.47 +0.4
6,360,482 + AO353_29275 0.47 -0.4
6,360,483 - AO353_29275 0.47 -1.6
6,360,520 - AO353_29275 0.52 +0.6
6,360,526 + AO353_29275 0.53 -0.2
6,360,526 + AO353_29275 0.53 +0.5
6,360,527 - AO353_29275 0.53 +0.4
6,360,543 + AO353_29275 0.56 -1.4
6,360,547 + AO353_29275 0.56 -0.4
6,360,547 + AO353_29275 0.56 +0.1
6,360,548 - AO353_29275 0.56 -0.6
6,360,548 - AO353_29275 0.56 -0.5
6,360,548 - AO353_29275 0.56 +0.1
6,360,620 - AO353_29275 0.67 -0.2
6,360,630 + AO353_29275 0.68 -0.7
6,360,637 + AO353_29275 0.69 -1.9
6,360,656 - AO353_29275 0.72 -0.0
6,360,660 - AO353_29275 0.72 -2.3
6,360,660 - AO353_29275 0.72 -0.2
6,360,664 - AO353_29275 0.73 -1.3
6,361,065 + AO353_29280 0.40 +0.2
6,361,071 - AO353_29280 0.42 -0.6
6,361,154 + AO353_29280 0.59 -0.2
6,361,155 - AO353_29280 0.59 +1.1
6,361,156 + AO353_29280 0.59 -0.0
6,361,157 - AO353_29280 0.60 +0.5
6,361,158 + AO353_29280 0.60 -0.5
6,361,236 - AO353_29280 0.76 +0.4
6,361,258 - AO353_29280 0.81 +1.2
6,361,329 + +0.0
6,361,329 + -0.4
6,361,406 - -0.0
6,361,476 + AO353_29285 0.16 -1.7
6,361,476 + AO353_29285 0.16 +0.5
6,361,476 + AO353_29285 0.16 -0.0
6,361,504 + AO353_29285 0.21 +0.6
6,361,611 + AO353_29285 0.41 -1.7
6,361,612 - AO353_29285 0.41 -0.9
6,361,719 + AO353_29285 0.60 -1.0
6,361,719 + +0.1
6,361,719 + AO353_29285 0.60 +0.8
6,361,719 + AO353_29285 0.60 +0.8
6,361,719 + AO353_29285 0.60 +0.0
6,361,719 + AO353_29285 0.60 +0.1
6,361,719 + AO353_29285 0.60 +1.1
6,361,719 + AO353_29285 0.60 +0.2
6,361,720 - AO353_29285 0.60 +0.4
6,361,720 - AO353_29285 0.60 +0.2
6,361,720 - AO353_29285 0.60 +1.1
6,361,720 - AO353_29285 0.60 -1.7
6,361,720 - AO353_29285 0.60 -2.1
6,361,720 - AO353_29285 0.60 +0.5
6,361,720 - AO353_29285 0.60 -0.2
6,361,720 - AO353_29285 0.60 -0.9
6,361,720 - AO353_29285 0.60 -0.7

Or see this region's nucleotide sequence