Experiment: D-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_29265 and AO353_29270 are separated by 492 nucleotides AO353_29270 and AO353_29275 overlap by 8 nucleotides AO353_29275 and AO353_29280 are separated by 15 nucleotides AO353_29280 and AO353_29285 are separated by 37 nucleotides
AO353_29265: AO353_29265 - GCN5 family acetyltransferase, at 6,358,698 to 6,359,165
_29265
AO353_29270: AO353_29270 - type VI secretion system protein, at 6,359,658 to 6,360,158
_29270
AO353_29275: AO353_29275 - hypothetical protein, at 6,360,151 to 6,360,855
_29275
AO353_29280: AO353_29280 - hypothetical protein, at 6,360,871 to 6,361,350
_29280
AO353_29285: AO353_29285 - XRE family transcriptional regulator, at 6,361,388 to 6,361,936
_29285
Position (kb)
6360
6361 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 6359.200 kb on + strand at 6359.200 kb on + strand at 6359.200 kb on + strand at 6359.201 kb on - strand at 6359.201 kb on - strand at 6359.201 kb on - strand at 6359.236 kb on - strand at 6359.239 kb on + strand at 6359.239 kb on + strand at 6359.239 kb on + strand at 6359.240 kb on - strand at 6359.240 kb on - strand at 6359.240 kb on - strand at 6359.240 kb on - strand at 6359.252 kb on - strand at 6359.322 kb on - strand at 6359.322 kb on - strand at 6359.322 kb on - strand at 6359.322 kb on - strand at 6359.379 kb on - strand at 6359.453 kb on + strand at 6359.477 kb on - strand at 6359.477 kb on - strand at 6359.494 kb on - strand at 6359.503 kb on + strand at 6359.504 kb on - strand at 6359.504 kb on - strand at 6359.569 kb on - strand at 6359.657 kb on + strand at 6359.658 kb on - strand at 6359.729 kb on - strand, within AO353_29270 at 6359.729 kb on - strand, within AO353_29270 at 6359.877 kb on - strand, within AO353_29270 at 6359.877 kb on - strand, within AO353_29270 at 6359.977 kb on - strand, within AO353_29270 at 6360.042 kb on + strand, within AO353_29270 at 6360.043 kb on - strand, within AO353_29270 at 6360.044 kb on + strand, within AO353_29270 at 6360.045 kb on - strand, within AO353_29270 at 6360.045 kb on - strand, within AO353_29270 at 6360.045 kb on - strand, within AO353_29270 at 6360.071 kb on - strand, within AO353_29270 at 6360.129 kb on + strand at 6360.129 kb on + strand at 6360.130 kb on - strand at 6360.131 kb on + strand at 6360.132 kb on - strand at 6360.134 kb on + strand at 6360.223 kb on - strand, within AO353_29275 at 6360.241 kb on + strand, within AO353_29275 at 6360.300 kb on + strand, within AO353_29275 at 6360.321 kb on + strand, within AO353_29275 at 6360.322 kb on - strand, within AO353_29275 at 6360.322 kb on - strand, within AO353_29275 at 6360.394 kb on + strand, within AO353_29275 at 6360.482 kb on + strand, within AO353_29275 at 6360.482 kb on + strand, within AO353_29275 at 6360.483 kb on - strand, within AO353_29275 at 6360.520 kb on - strand, within AO353_29275 at 6360.526 kb on + strand, within AO353_29275 at 6360.526 kb on + strand, within AO353_29275 at 6360.527 kb on - strand, within AO353_29275 at 6360.543 kb on + strand, within AO353_29275 at 6360.547 kb on + strand, within AO353_29275 at 6360.547 kb on + strand, within AO353_29275 at 6360.548 kb on - strand, within AO353_29275 at 6360.548 kb on - strand, within AO353_29275 at 6360.548 kb on - strand, within AO353_29275 at 6360.620 kb on - strand, within AO353_29275 at 6360.630 kb on + strand, within AO353_29275 at 6360.637 kb on + strand, within AO353_29275 at 6360.656 kb on - strand, within AO353_29275 at 6360.660 kb on - strand, within AO353_29275 at 6360.660 kb on - strand, within AO353_29275 at 6360.664 kb on - strand, within AO353_29275 at 6361.065 kb on + strand, within AO353_29280 at 6361.071 kb on - strand, within AO353_29280 at 6361.154 kb on + strand, within AO353_29280 at 6361.155 kb on - strand, within AO353_29280 at 6361.156 kb on + strand, within AO353_29280 at 6361.157 kb on - strand, within AO353_29280 at 6361.158 kb on + strand, within AO353_29280 at 6361.236 kb on - strand, within AO353_29280 at 6361.258 kb on - strand, within AO353_29280 at 6361.329 kb on + strand at 6361.329 kb on + strand at 6361.406 kb on - strand at 6361.476 kb on + strand, within AO353_29285 at 6361.476 kb on + strand, within AO353_29285 at 6361.476 kb on + strand, within AO353_29285 at 6361.504 kb on + strand, within AO353_29285 at 6361.611 kb on + strand, within AO353_29285 at 6361.612 kb on - strand, within AO353_29285 at 6361.719 kb on + strand, within AO353_29285 at 6361.719 kb on + strand at 6361.719 kb on + strand, within AO353_29285 at 6361.719 kb on + strand, within AO353_29285 at 6361.719 kb on + strand, within AO353_29285 at 6361.719 kb on + strand, within AO353_29285 at 6361.719 kb on + strand, within AO353_29285 at 6361.719 kb on + strand, within AO353_29285 at 6361.720 kb on - strand, within AO353_29285 at 6361.720 kb on - strand, within AO353_29285 at 6361.720 kb on - strand, within AO353_29285 at 6361.720 kb on - strand, within AO353_29285 at 6361.720 kb on - strand, within AO353_29285 at 6361.720 kb on - strand, within AO353_29285 at 6361.720 kb on - strand, within AO353_29285 at 6361.720 kb on - strand, within AO353_29285 at 6361.720 kb on - strand, within AO353_29285
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (N) remove 6,359,200 + -0.7 6,359,200 + -0.6 6,359,200 + +0.4 6,359,201 - -0.9 6,359,201 - +0.1 6,359,201 - +0.7 6,359,236 - +1.1 6,359,239 + -2.1 6,359,239 + +0.2 6,359,239 + -1.0 6,359,240 - +0.6 6,359,240 - -0.4 6,359,240 - -1.8 6,359,240 - -0.1 6,359,252 - +0.1 6,359,322 - -0.3 6,359,322 - +0.4 6,359,322 - +0.9 6,359,322 - -0.0 6,359,379 - +0.4 6,359,453 + -1.6 6,359,477 - -0.9 6,359,477 - +0.8 6,359,494 - +0.3 6,359,503 + +0.7 6,359,504 - +0.9 6,359,504 - -2.9 6,359,569 - +0.3 6,359,657 + +0.2 6,359,658 - -1.7 6,359,729 - AO353_29270 0.14 -1.1 6,359,729 - AO353_29270 0.14 +0.4 6,359,877 - AO353_29270 0.44 -0.3 6,359,877 - AO353_29270 0.44 +0.8 6,359,977 - AO353_29270 0.64 +0.6 6,360,042 + AO353_29270 0.77 -0.9 6,360,043 - AO353_29270 0.77 +0.7 6,360,044 + AO353_29270 0.77 -1.5 6,360,045 - AO353_29270 0.77 -0.0 6,360,045 - AO353_29270 0.77 -1.3 6,360,045 - AO353_29270 0.77 -0.4 6,360,071 - AO353_29270 0.82 -0.9 6,360,129 + -0.2 6,360,129 + +1.6 6,360,130 - +1.2 6,360,131 + -0.4 6,360,132 - -0.2 6,360,134 + +1.1 6,360,223 - AO353_29275 0.10 -1.3 6,360,241 + AO353_29275 0.13 +0.1 6,360,300 + AO353_29275 0.21 -0.6 6,360,321 + AO353_29275 0.24 +0.1 6,360,322 - AO353_29275 0.24 -1.4 6,360,322 - AO353_29275 0.24 -0.1 6,360,394 + AO353_29275 0.34 -0.9 6,360,482 + AO353_29275 0.47 +0.4 6,360,482 + AO353_29275 0.47 -0.4 6,360,483 - AO353_29275 0.47 -1.6 6,360,520 - AO353_29275 0.52 +0.6 6,360,526 + AO353_29275 0.53 -0.2 6,360,526 + AO353_29275 0.53 +0.5 6,360,527 - AO353_29275 0.53 +0.4 6,360,543 + AO353_29275 0.56 -1.4 6,360,547 + AO353_29275 0.56 -0.4 6,360,547 + AO353_29275 0.56 +0.1 6,360,548 - AO353_29275 0.56 -0.6 6,360,548 - AO353_29275 0.56 -0.5 6,360,548 - AO353_29275 0.56 +0.1 6,360,620 - AO353_29275 0.67 -0.2 6,360,630 + AO353_29275 0.68 -0.7 6,360,637 + AO353_29275 0.69 -1.9 6,360,656 - AO353_29275 0.72 -0.0 6,360,660 - AO353_29275 0.72 -2.3 6,360,660 - AO353_29275 0.72 -0.2 6,360,664 - AO353_29275 0.73 -1.3 6,361,065 + AO353_29280 0.40 +0.2 6,361,071 - AO353_29280 0.42 -0.6 6,361,154 + AO353_29280 0.59 -0.2 6,361,155 - AO353_29280 0.59 +1.1 6,361,156 + AO353_29280 0.59 -0.0 6,361,157 - AO353_29280 0.60 +0.5 6,361,158 + AO353_29280 0.60 -0.5 6,361,236 - AO353_29280 0.76 +0.4 6,361,258 - AO353_29280 0.81 +1.2 6,361,329 + +0.0 6,361,329 + -0.4 6,361,406 - -0.0 6,361,476 + AO353_29285 0.16 -1.7 6,361,476 + AO353_29285 0.16 +0.5 6,361,476 + AO353_29285 0.16 -0.0 6,361,504 + AO353_29285 0.21 +0.6 6,361,611 + AO353_29285 0.41 -1.7 6,361,612 - AO353_29285 0.41 -0.9 6,361,719 + AO353_29285 0.60 -1.0 6,361,719 + +0.1 6,361,719 + AO353_29285 0.60 +0.8 6,361,719 + AO353_29285 0.60 +0.8 6,361,719 + AO353_29285 0.60 +0.0 6,361,719 + AO353_29285 0.60 +0.1 6,361,719 + AO353_29285 0.60 +1.1 6,361,719 + AO353_29285 0.60 +0.2 6,361,720 - AO353_29285 0.60 +0.4 6,361,720 - AO353_29285 0.60 +0.2 6,361,720 - AO353_29285 0.60 +1.1 6,361,720 - AO353_29285 0.60 -1.7 6,361,720 - AO353_29285 0.60 -2.1 6,361,720 - AO353_29285 0.60 +0.5 6,361,720 - AO353_29285 0.60 -0.2 6,361,720 - AO353_29285 0.60 -0.9 6,361,720 - AO353_29285 0.60 -0.7
Or see this region's nucleotide sequence