Experiment: D-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_16920 and AO353_16925 are separated by 125 nucleotides AO353_16925 and AO353_16930 are separated by 43 nucleotides AO353_16930 and AO353_16935 are separated by 156 nucleotides
AO353_16920: AO353_16920 - proline--tRNA ligase, at 3,743,960 to 3,745,675
_16920
AO353_16925: AO353_16925 - AmpG family muropeptide MFS transporter, at 3,745,801 to 3,747,363
_16925
AO353_16930: AO353_16930 - DNA base-flipping protein YbaZ, at 3,747,407 to 3,747,760
_16930
AO353_16935: AO353_16935 - cold-shock protein, at 3,747,917 to 3,748,126
_16935
Position (kb)
3745
3746
3747
3748 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3745.704 kb on - strand at 3745.802 kb on + strand at 3745.803 kb on - strand at 3745.803 kb on - strand at 3745.803 kb on - strand at 3745.952 kb on + strand at 3745.952 kb on + strand at 3745.952 kb on + strand at 3745.952 kb on + strand at 3745.952 kb on + strand at 3745.953 kb on - strand at 3745.953 kb on - strand at 3745.953 kb on - strand at 3745.953 kb on - strand at 3745.953 kb on - strand at 3745.953 kb on - strand at 3745.953 kb on - strand at 3746.069 kb on + strand, within AO353_16925 at 3746.069 kb on + strand, within AO353_16925 at 3746.070 kb on - strand, within AO353_16925 at 3746.070 kb on - strand, within AO353_16925 at 3746.070 kb on - strand, within AO353_16925 at 3746.070 kb on - strand, within AO353_16925 at 3746.339 kb on + strand, within AO353_16925 at 3746.339 kb on + strand, within AO353_16925 at 3746.339 kb on + strand, within AO353_16925 at 3746.339 kb on + strand, within AO353_16925 at 3746.339 kb on + strand, within AO353_16925 at 3746.339 kb on + strand, within AO353_16925 at 3746.340 kb on - strand, within AO353_16925 at 3746.340 kb on - strand, within AO353_16925 at 3746.357 kb on - strand, within AO353_16925 at 3746.516 kb on + strand, within AO353_16925 at 3746.516 kb on + strand, within AO353_16925 at 3746.516 kb on + strand, within AO353_16925 at 3746.516 kb on + strand, within AO353_16925 at 3746.516 kb on + strand, within AO353_16925 at 3746.516 kb on + strand, within AO353_16925 at 3746.517 kb on - strand, within AO353_16925 at 3746.517 kb on - strand, within AO353_16925 at 3746.517 kb on - strand, within AO353_16925 at 3746.517 kb on - strand, within AO353_16925 at 3746.517 kb on - strand, within AO353_16925 at 3746.517 kb on - strand, within AO353_16925 at 3746.530 kb on + strand, within AO353_16925 at 3746.531 kb on - strand, within AO353_16925 at 3746.531 kb on - strand, within AO353_16925 at 3746.531 kb on - strand, within AO353_16925 at 3746.606 kb on + strand, within AO353_16925 at 3746.606 kb on + strand, within AO353_16925 at 3746.606 kb on + strand, within AO353_16925 at 3746.606 kb on + strand, within AO353_16925 at 3746.607 kb on - strand, within AO353_16925 at 3746.607 kb on - strand, within AO353_16925 at 3746.607 kb on - strand, within AO353_16925 at 3746.607 kb on - strand, within AO353_16925 at 3746.607 kb on - strand, within AO353_16925 at 3746.607 kb on - strand, within AO353_16925 at 3746.607 kb on - strand, within AO353_16925 at 3746.607 kb on - strand, within AO353_16925 at 3746.616 kb on + strand, within AO353_16925 at 3746.653 kb on + strand, within AO353_16925 at 3746.654 kb on - strand, within AO353_16925 at 3746.654 kb on - strand, within AO353_16925 at 3746.659 kb on + strand, within AO353_16925 at 3746.786 kb on + strand, within AO353_16925 at 3746.787 kb on - strand, within AO353_16925 at 3746.787 kb on - strand, within AO353_16925 at 3746.787 kb on - strand, within AO353_16925 at 3746.787 kb on - strand, within AO353_16925 at 3746.813 kb on + strand, within AO353_16925 at 3746.813 kb on + strand, within AO353_16925 at 3746.814 kb on - strand, within AO353_16925 at 3746.814 kb on - strand, within AO353_16925 at 3746.814 kb on - strand, within AO353_16925 at 3746.814 kb on - strand, within AO353_16925 at 3746.898 kb on + strand, within AO353_16925 at 3746.898 kb on + strand, within AO353_16925 at 3746.898 kb on + strand, within AO353_16925 at 3746.898 kb on + strand, within AO353_16925 at 3746.898 kb on + strand, within AO353_16925 at 3746.898 kb on + strand, within AO353_16925 at 3746.898 kb on + strand, within AO353_16925 at 3746.898 kb on + strand at 3746.898 kb on + strand, within AO353_16925 at 3746.898 kb on + strand, within AO353_16925 at 3746.898 kb on + strand, within AO353_16925 at 3746.898 kb on + strand, within AO353_16925 at 3746.898 kb on + strand, within AO353_16925 at 3746.898 kb on + strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.900 kb on + strand, within AO353_16925 at 3746.900 kb on + strand, within AO353_16925 at 3746.900 kb on + strand, within AO353_16925 at 3746.900 kb on + strand, within AO353_16925 at 3746.900 kb on + strand, within AO353_16925 at 3746.900 kb on + strand, within AO353_16925 at 3746.900 kb on + strand, within AO353_16925 at 3746.900 kb on + strand, within AO353_16925 at 3746.901 kb on - strand, within AO353_16925 at 3746.901 kb on - strand, within AO353_16925 at 3746.901 kb on - strand at 3746.901 kb on - strand, within AO353_16925 at 3746.901 kb on - strand, within AO353_16925 at 3746.901 kb on - strand, within AO353_16925 at 3746.901 kb on - strand, within AO353_16925 at 3746.901 kb on - strand, within AO353_16925 at 3746.901 kb on - strand, within AO353_16925 at 3746.901 kb on - strand, within AO353_16925 at 3746.967 kb on + strand, within AO353_16925 at 3746.968 kb on - strand, within AO353_16925 at 3746.968 kb on - strand, within AO353_16925 at 3747.076 kb on + strand, within AO353_16925 at 3747.076 kb on + strand, within AO353_16925 at 3747.076 kb on + strand, within AO353_16925 at 3747.076 kb on + strand, within AO353_16925 at 3747.077 kb on - strand, within AO353_16925 at 3747.077 kb on - strand, within AO353_16925 at 3747.077 kb on - strand, within AO353_16925 at 3747.077 kb on - strand, within AO353_16925 at 3747.077 kb on - strand, within AO353_16925 at 3747.125 kb on - strand, within AO353_16925 at 3747.168 kb on + strand, within AO353_16925 at 3747.169 kb on - strand, within AO353_16925 at 3747.176 kb on + strand, within AO353_16925 at 3747.176 kb on + strand, within AO353_16925 at 3747.176 kb on + strand, within AO353_16925 at 3747.177 kb on - strand, within AO353_16925 at 3747.177 kb on - strand, within AO353_16925 at 3747.269 kb on + strand at 3747.269 kb on + strand at 3747.269 kb on + strand at 3747.269 kb on + strand at 3747.269 kb on + strand at 3747.269 kb on + strand at 3747.269 kb on + strand at 3747.269 kb on + strand at 3747.269 kb on + strand at 3747.269 kb on + strand at 3747.269 kb on + strand at 3747.270 kb on - strand at 3747.270 kb on - strand at 3747.270 kb on - strand at 3747.270 kb on - strand at 3747.270 kb on - strand at 3747.270 kb on - strand at 3747.270 kb on - strand at 3747.270 kb on - strand at 3747.270 kb on - strand at 3747.270 kb on - strand at 3747.270 kb on - strand at 3747.295 kb on + strand at 3747.301 kb on + strand at 3747.301 kb on + strand at 3747.301 kb on + strand at 3747.301 kb on + strand at 3747.301 kb on + strand at 3747.301 kb on + strand at 3747.301 kb on + strand at 3747.302 kb on - strand at 3747.302 kb on - strand at 3747.302 kb on - strand at 3747.302 kb on - strand at 3747.302 kb on - strand at 3747.302 kb on - strand at 3747.302 kb on - strand at 3747.304 kb on + strand at 3747.304 kb on + strand at 3747.304 kb on + strand at 3747.305 kb on - strand at 3747.326 kb on + strand at 3747.448 kb on + strand, within AO353_16930 at 3747.448 kb on + strand, within AO353_16930 at 3747.530 kb on + strand, within AO353_16930 at 3747.530 kb on + strand, within AO353_16930 at 3747.530 kb on + strand, within AO353_16930 at 3747.557 kb on + strand, within AO353_16930 at 3747.557 kb on + strand, within AO353_16930 at 3747.660 kb on + strand, within AO353_16930 at 3747.660 kb on + strand, within AO353_16930 at 3747.661 kb on - strand, within AO353_16930 at 3747.661 kb on - strand, within AO353_16930 at 3747.702 kb on + strand, within AO353_16930 at 3747.702 kb on + strand, within AO353_16930 at 3747.703 kb on - strand, within AO353_16930 at 3747.802 kb on + strand at 3747.802 kb on + strand at 3747.802 kb on + strand at 3747.802 kb on + strand at 3747.802 kb on + strand at 3747.802 kb on + strand at 3747.803 kb on - strand at 3747.803 kb on - strand at 3747.803 kb on - strand at 3747.901 kb on - strand at 3747.918 kb on + strand at 3747.918 kb on + strand at 3747.918 kb on + strand at 3747.919 kb on - strand at 3747.919 kb on - strand at 3747.919 kb on - strand at 3747.923 kb on - strand at 3748.022 kb on - strand, within AO353_16935 at 3748.100 kb on - strand, within AO353_16935 at 3748.121 kb on - strand at 3748.131 kb on + strand at 3748.132 kb on - strand at 3748.132 kb on - strand at 3748.132 kb on - strand at 3748.132 kb on - strand at 3748.132 kb on - strand at 3748.132 kb on - strand at 3748.132 kb on - strand at 3748.150 kb on - strand at 3748.150 kb on - strand at 3748.150 kb on - strand at 3748.150 kb on - strand at 3748.150 kb on - strand at 3748.150 kb on - strand at 3748.210 kb on + strand at 3748.211 kb on - strand at 3748.235 kb on + strand at 3748.235 kb on + strand at 3748.235 kb on + strand at 3748.235 kb on + strand at 3748.235 kb on + strand at 3748.235 kb on + strand at 3748.236 kb on - strand at 3748.243 kb on - strand at 3748.355 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (N) remove 3,745,704 - +1.2 3,745,802 + -0.1 3,745,803 - +1.1 3,745,803 - +0.5 3,745,803 - +1.4 3,745,952 + +1.0 3,745,952 + +0.4 3,745,952 + -0.2 3,745,952 + +0.3 3,745,952 + +0.1 3,745,953 - -0.2 3,745,953 - +0.3 3,745,953 - +0.6 3,745,953 - +0.7 3,745,953 - +3.2 3,745,953 - -0.4 3,745,953 - +1.0 3,746,069 + AO353_16925 0.17 -0.4 3,746,069 + AO353_16925 0.17 +0.5 3,746,070 - AO353_16925 0.17 +0.5 3,746,070 - AO353_16925 0.17 +0.1 3,746,070 - AO353_16925 0.17 -1.8 3,746,070 - AO353_16925 0.17 -0.5 3,746,339 + AO353_16925 0.34 -0.8 3,746,339 + AO353_16925 0.34 -0.5 3,746,339 + AO353_16925 0.34 +0.0 3,746,339 + AO353_16925 0.34 -1.2 3,746,339 + AO353_16925 0.34 +0.4 3,746,339 + AO353_16925 0.34 -0.5 3,746,340 - AO353_16925 0.34 -1.4 3,746,340 - AO353_16925 0.34 -0.9 3,746,357 - AO353_16925 0.36 +0.2 3,746,516 + AO353_16925 0.46 +0.7 3,746,516 + AO353_16925 0.46 -0.2 3,746,516 + AO353_16925 0.46 -2.7 3,746,516 + AO353_16925 0.46 -1.1 3,746,516 + AO353_16925 0.46 +0.9 3,746,516 + AO353_16925 0.46 -0.7 3,746,517 - AO353_16925 0.46 +0.0 3,746,517 - AO353_16925 0.46 -2.4 3,746,517 - AO353_16925 0.46 -0.5 3,746,517 - AO353_16925 0.46 +0.2 3,746,517 - AO353_16925 0.46 +0.2 3,746,517 - AO353_16925 0.46 -0.3 3,746,530 + AO353_16925 0.47 +0.3 3,746,531 - AO353_16925 0.47 -0.7 3,746,531 - AO353_16925 0.47 +1.3 3,746,531 - AO353_16925 0.47 -1.6 3,746,606 + AO353_16925 0.52 -1.0 3,746,606 + AO353_16925 0.52 +0.7 3,746,606 + AO353_16925 0.52 -1.8 3,746,606 + AO353_16925 0.52 -0.1 3,746,607 - AO353_16925 0.52 +1.5 3,746,607 - AO353_16925 0.52 -0.3 3,746,607 - AO353_16925 0.52 -0.7 3,746,607 - AO353_16925 0.52 +0.7 3,746,607 - AO353_16925 0.52 -0.4 3,746,607 - AO353_16925 0.52 -0.7 3,746,607 - AO353_16925 0.52 +0.3 3,746,607 - AO353_16925 0.52 +0.5 3,746,616 + AO353_16925 0.52 +0.6 3,746,653 + AO353_16925 0.55 +0.3 3,746,654 - AO353_16925 0.55 +0.6 3,746,654 - AO353_16925 0.55 -0.4 3,746,659 + AO353_16925 0.55 -0.4 3,746,786 + AO353_16925 0.63 -0.2 3,746,787 - AO353_16925 0.63 -0.7 3,746,787 - AO353_16925 0.63 +0.1 3,746,787 - AO353_16925 0.63 +0.4 3,746,787 - AO353_16925 0.63 +0.9 3,746,813 + AO353_16925 0.65 +0.9 3,746,813 + AO353_16925 0.65 -0.3 3,746,814 - AO353_16925 0.65 +0.3 3,746,814 - AO353_16925 0.65 -1.0 3,746,814 - AO353_16925 0.65 +0.4 3,746,814 - AO353_16925 0.65 -0.0 3,746,898 + AO353_16925 0.70 -0.4 3,746,898 + AO353_16925 0.70 -0.9 3,746,898 + AO353_16925 0.70 -0.2 3,746,898 + AO353_16925 0.70 -2.2 3,746,898 + AO353_16925 0.70 +1.0 3,746,898 + AO353_16925 0.70 -0.2 3,746,898 + AO353_16925 0.70 +1.9 3,746,898 + -0.1 3,746,898 + AO353_16925 0.70 +1.3 3,746,898 + AO353_16925 0.70 -0.2 3,746,898 + AO353_16925 0.70 +0.5 3,746,898 + AO353_16925 0.70 -0.2 3,746,898 + AO353_16925 0.70 -1.6 3,746,898 + AO353_16925 0.70 -0.9 3,746,899 - AO353_16925 0.70 +0.2 3,746,899 - AO353_16925 0.70 -0.2 3,746,899 - AO353_16925 0.70 +0.2 3,746,899 - AO353_16925 0.70 +0.1 3,746,899 - AO353_16925 0.70 -0.5 3,746,899 - AO353_16925 0.70 -0.2 3,746,899 - AO353_16925 0.70 +1.1 3,746,899 - AO353_16925 0.70 -1.3 3,746,899 - AO353_16925 0.70 +0.6 3,746,899 - AO353_16925 0.70 -0.1 3,746,899 - AO353_16925 0.70 +1.1 3,746,899 - AO353_16925 0.70 -0.7 3,746,899 - AO353_16925 0.70 +1.0 3,746,899 - AO353_16925 0.70 -0.6 3,746,899 - AO353_16925 0.70 +0.2 3,746,899 - AO353_16925 0.70 -0.2 3,746,899 - AO353_16925 0.70 +0.4 3,746,899 - AO353_16925 0.70 +0.1 3,746,899 - AO353_16925 0.70 +0.1 3,746,899 - AO353_16925 0.70 -0.2 3,746,900 + AO353_16925 0.70 +0.2 3,746,900 + AO353_16925 0.70 +0.3 3,746,900 + AO353_16925 0.70 -2.0 3,746,900 + AO353_16925 0.70 -0.9 3,746,900 + AO353_16925 0.70 -1.0 3,746,900 + AO353_16925 0.70 -1.6 3,746,900 + AO353_16925 0.70 +0.0 3,746,900 + AO353_16925 0.70 -0.5 3,746,901 - AO353_16925 0.70 -0.6 3,746,901 - AO353_16925 0.70 -0.4 3,746,901 - +0.7 3,746,901 - AO353_16925 0.70 -2.0 3,746,901 - AO353_16925 0.70 -0.0 3,746,901 - AO353_16925 0.70 -0.9 3,746,901 - AO353_16925 0.70 +0.3 3,746,901 - AO353_16925 0.70 +0.5 3,746,901 - AO353_16925 0.70 -1.2 3,746,901 - AO353_16925 0.70 -0.6 3,746,967 + AO353_16925 0.75 +1.5 3,746,968 - AO353_16925 0.75 +1.9 3,746,968 - AO353_16925 0.75 +0.1 3,747,076 + AO353_16925 0.82 -0.8 3,747,076 + AO353_16925 0.82 -0.9 3,747,076 + AO353_16925 0.82 -2.4 3,747,076 + AO353_16925 0.82 +0.0 3,747,077 - AO353_16925 0.82 +1.6 3,747,077 - AO353_16925 0.82 -0.2 3,747,077 - AO353_16925 0.82 -1.1 3,747,077 - AO353_16925 0.82 -0.3 3,747,077 - AO353_16925 0.82 +0.5 3,747,125 - AO353_16925 0.85 +2.9 3,747,168 + AO353_16925 0.87 -2.1 3,747,169 - AO353_16925 0.88 -0.5 3,747,176 + AO353_16925 0.88 +0.0 3,747,176 + AO353_16925 0.88 -1.7 3,747,176 + AO353_16925 0.88 -0.9 3,747,177 - AO353_16925 0.88 +0.4 3,747,177 - AO353_16925 0.88 -0.2 3,747,269 + +0.9 3,747,269 + -1.3 3,747,269 + -1.6 3,747,269 + +0.5 3,747,269 + -0.1 3,747,269 + -0.1 3,747,269 + -0.4 3,747,269 + +0.2 3,747,269 + -0.5 3,747,269 + +1.3 3,747,269 + +0.3 3,747,270 - -0.2 3,747,270 - +1.0 3,747,270 - +0.6 3,747,270 - +0.2 3,747,270 - +0.4 3,747,270 - +0.3 3,747,270 - +0.1 3,747,270 - -0.3 3,747,270 - +0.6 3,747,270 - -0.0 3,747,270 - +0.7 3,747,295 + -0.5 3,747,301 + +0.3 3,747,301 + -0.1 3,747,301 + +0.3 3,747,301 + +0.0 3,747,301 + +1.0 3,747,301 + -0.1 3,747,301 + -0.1 3,747,302 - +0.0 3,747,302 - +0.1 3,747,302 - -0.1 3,747,302 - -1.3 3,747,302 - +1.3 3,747,302 - +0.5 3,747,302 - -0.9 3,747,304 + -0.6 3,747,304 + +0.5 3,747,304 + -0.8 3,747,305 - +0.2 3,747,326 + -2.0 3,747,448 + AO353_16930 0.12 -0.6 3,747,448 + AO353_16930 0.12 +1.0 3,747,530 + AO353_16930 0.35 +0.5 3,747,530 + AO353_16930 0.35 -0.4 3,747,530 + AO353_16930 0.35 -0.9 3,747,557 + AO353_16930 0.42 +0.4 3,747,557 + AO353_16930 0.42 -0.1 3,747,660 + AO353_16930 0.71 -0.1 3,747,660 + AO353_16930 0.71 -0.2 3,747,661 - AO353_16930 0.72 -0.8 3,747,661 - AO353_16930 0.72 -0.8 3,747,702 + AO353_16930 0.83 +0.3 3,747,702 + AO353_16930 0.83 +0.3 3,747,703 - AO353_16930 0.84 +0.2 3,747,802 + +2.1 3,747,802 + +0.1 3,747,802 + -0.7 3,747,802 + +0.3 3,747,802 + -1.2 3,747,802 + -0.3 3,747,803 - -2.0 3,747,803 - -0.4 3,747,803 - +0.3 3,747,901 - -0.1 3,747,918 + -0.1 3,747,918 + +0.6 3,747,918 + -1.1 3,747,919 - -0.1 3,747,919 - +0.8 3,747,919 - +1.5 3,747,923 - -1.1 3,748,022 - AO353_16935 0.50 +1.1 3,748,100 - AO353_16935 0.87 -0.2 3,748,121 - -0.9 3,748,131 + -0.5 3,748,132 - +1.2 3,748,132 - +0.8 3,748,132 - -1.3 3,748,132 - +0.1 3,748,132 - +0.3 3,748,132 - -0.4 3,748,132 - +1.4 3,748,150 - +2.6 3,748,150 - -0.0 3,748,150 - +1.7 3,748,150 - -0.6 3,748,150 - -0.5 3,748,150 - +0.6 3,748,210 + -1.3 3,748,211 - -1.3 3,748,235 + +0.7 3,748,235 + -0.1 3,748,235 + +1.4 3,748,235 + +0.3 3,748,235 + -0.8 3,748,235 + -1.5 3,748,236 - +0.2 3,748,243 - -0.9 3,748,355 - +0.2
Or see this region's nucleotide sequence