Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS02090

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS02080 and PFLU_RS02085 overlap by 4 nucleotidesPFLU_RS02085 and PFLU_RS02090 overlap by 4 nucleotidesPFLU_RS02090 and PFLU_RS02095 overlap by 4 nucleotidesPFLU_RS02095 and PFLU_RS02100 overlap by 4 nucleotides PFLU_RS02080: PFLU_RS02080 - 3-oxoacyl-ACP reductase FabG, at 470,135 to 470,863 _RS02080 PFLU_RS02085: PFLU_RS02085 - hotdog family protein, at 470,860 to 471,321 _RS02085 PFLU_RS02090: PFLU_RS02090 - beta-ketoacyl-[acyl-carrier-protein] synthase family protein, at 471,318 to 472,484 _RS02090 PFLU_RS02095: PFLU_RS02095 - hypothetical protein, at 472,481 to 472,963 _RS02095 PFLU_RS02100: PFLU_RS02100 - class I SAM-dependent methyltransferase, at 472,960 to 473,709 _RS02100 Position (kb) 471 472 473Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 470.406 kb on + strand, within PFLU_RS02080at 470.406 kb on + strand, within PFLU_RS02080at 470.407 kb on - strand, within PFLU_RS02080at 470.407 kb on - strand, within PFLU_RS02080at 470.407 kb on - strand, within PFLU_RS02080at 470.407 kb on - strand, within PFLU_RS02080at 470.407 kb on - strand, within PFLU_RS02080at 470.462 kb on - strand, within PFLU_RS02080at 470.517 kb on + strand, within PFLU_RS02080at 470.517 kb on + strand, within PFLU_RS02080at 470.518 kb on - strand, within PFLU_RS02080at 470.518 kb on - strand, within PFLU_RS02080at 470.518 kb on - strand, within PFLU_RS02080at 470.619 kb on + strand, within PFLU_RS02080at 470.620 kb on - strand, within PFLU_RS02080at 470.620 kb on - strand, within PFLU_RS02080at 470.620 kb on - strand, within PFLU_RS02080at 470.620 kb on - strand, within PFLU_RS02080at 470.620 kb on - strand, within PFLU_RS02080at 470.622 kb on + strand, within PFLU_RS02080at 470.622 kb on + strand, within PFLU_RS02080at 470.622 kb on + strand, within PFLU_RS02080at 470.623 kb on - strand, within PFLU_RS02080at 470.623 kb on - strand, within PFLU_RS02080at 470.623 kb on - strand, within PFLU_RS02080at 470.869 kb on + strandat 470.869 kb on + strandat 470.869 kb on + strandat 470.869 kb on + strandat 470.869 kb on + strandat 470.869 kb on + strandat 470.870 kb on - strandat 470.870 kb on - strandat 470.870 kb on - strandat 470.887 kb on + strandat 470.888 kb on - strandat 470.891 kb on + strandat 470.891 kb on + strandat 470.891 kb on + strandat 470.891 kb on + strandat 470.891 kb on + strandat 470.892 kb on - strandat 470.892 kb on - strandat 470.917 kb on + strand, within PFLU_RS02085at 470.917 kb on + strand, within PFLU_RS02085at 470.917 kb on + strand, within PFLU_RS02085at 470.917 kb on + strand, within PFLU_RS02085at 470.917 kb on + strand, within PFLU_RS02085at 470.918 kb on - strand, within PFLU_RS02085at 470.918 kb on - strand, within PFLU_RS02085at 470.918 kb on - strand, within PFLU_RS02085at 471.063 kb on + strand, within PFLU_RS02085at 471.063 kb on + strand, within PFLU_RS02085at 471.063 kb on + strand, within PFLU_RS02085at 471.063 kb on + strand, within PFLU_RS02085at 471.063 kb on + strand, within PFLU_RS02085at 471.063 kb on + strand, within PFLU_RS02085at 471.064 kb on - strand, within PFLU_RS02085at 471.064 kb on - strand, within PFLU_RS02085at 471.064 kb on - strand, within PFLU_RS02085at 471.064 kb on - strand, within PFLU_RS02085at 471.064 kb on - strand, within PFLU_RS02085at 471.064 kb on - strand, within PFLU_RS02085at 471.064 kb on - strand, within PFLU_RS02085at 471.064 kb on - strand, within PFLU_RS02085at 471.064 kb on - strand, within PFLU_RS02085at 471.064 kb on - strand, within PFLU_RS02085at 471.064 kb on - strand, within PFLU_RS02085at 471.064 kb on - strand, within PFLU_RS02085at 471.064 kb on - strand, within PFLU_RS02085at 471.128 kb on + strand, within PFLU_RS02085at 471.743 kb on + strand, within PFLU_RS02090at 471.743 kb on + strand, within PFLU_RS02090at 471.743 kb on + strand, within PFLU_RS02090at 471.743 kb on + strand, within PFLU_RS02090at 471.743 kb on + strand, within PFLU_RS02090at 471.743 kb on + strand, within PFLU_RS02090at 471.743 kb on + strand, within PFLU_RS02090at 471.743 kb on + strand, within PFLU_RS02090at 471.744 kb on - strand, within PFLU_RS02090at 471.744 kb on - strand, within PFLU_RS02090at 471.744 kb on - strand, within PFLU_RS02090at 471.744 kb on - strand, within PFLU_RS02090at 471.744 kb on - strand, within PFLU_RS02090at 471.744 kb on - strand, within PFLU_RS02090at 471.744 kb on - strand, within PFLU_RS02090at 471.744 kb on - strand, within PFLU_RS02090at 471.744 kb on - strand, within PFLU_RS02090at 471.744 kb on - strand, within PFLU_RS02090at 472.033 kb on + strand, within PFLU_RS02090at 472.033 kb on + strand, within PFLU_RS02090at 472.033 kb on + strand, within PFLU_RS02090at 472.034 kb on - strand, within PFLU_RS02090at 472.034 kb on - strand, within PFLU_RS02090at 472.034 kb on - strand, within PFLU_RS02090at 472.034 kb on - strand, within PFLU_RS02090at 472.102 kb on + strand, within PFLU_RS02090at 472.103 kb on - strand, within PFLU_RS02090at 472.108 kb on + strand, within PFLU_RS02090at 472.108 kb on + strand, within PFLU_RS02090at 472.108 kb on + strand, within PFLU_RS02090at 472.109 kb on - strand, within PFLU_RS02090at 472.109 kb on - strand, within PFLU_RS02090at 472.138 kb on + strand, within PFLU_RS02090at 472.139 kb on - strand, within PFLU_RS02090at 472.139 kb on - strand, within PFLU_RS02090at 472.474 kb on + strandat 472.474 kb on + strandat 472.474 kb on + strandat 472.475 kb on - strandat 472.475 kb on - strandat 472.563 kb on + strand, within PFLU_RS02095at 472.563 kb on + strand, within PFLU_RS02095at 472.563 kb on + strand, within PFLU_RS02095at 472.563 kb on + strand, within PFLU_RS02095at 472.564 kb on - strand, within PFLU_RS02095at 472.564 kb on - strand, within PFLU_RS02095at 472.564 kb on - strand, within PFLU_RS02095at 472.564 kb on - strand, within PFLU_RS02095at 472.564 kb on - strand, within PFLU_RS02095at 472.564 kb on - strand, within PFLU_RS02095at 472.706 kb on + strand, within PFLU_RS02095at 472.706 kb on + strand, within PFLU_RS02095at 472.706 kb on + strand, within PFLU_RS02095at 472.706 kb on + strand, within PFLU_RS02095at 472.707 kb on - strand, within PFLU_RS02095at 473.096 kb on + strand, within PFLU_RS02100at 473.096 kb on + strand, within PFLU_RS02100at 473.096 kb on + strand, within PFLU_RS02100at 473.096 kb on + strand, within PFLU_RS02100at 473.096 kb on + strand, within PFLU_RS02100at 473.097 kb on - strand, within PFLU_RS02100at 473.097 kb on - strand, within PFLU_RS02100at 473.097 kb on - strand, within PFLU_RS02100at 473.097 kb on - strand, within PFLU_RS02100at 473.097 kb on - strand, within PFLU_RS02100at 473.097 kb on - strand, within PFLU_RS02100at 473.103 kb on - strand, within PFLU_RS02100at 473.156 kb on + strand, within PFLU_RS02100at 473.209 kb on + strand, within PFLU_RS02100at 473.224 kb on - strand, within PFLU_RS02100at 473.225 kb on + strand, within PFLU_RS02100at 473.225 kb on + strand, within PFLU_RS02100at 473.225 kb on + strand, within PFLU_RS02100at 473.225 kb on + strand, within PFLU_RS02100at 473.225 kb on + strand, within PFLU_RS02100at 473.225 kb on + strand, within PFLU_RS02100at 473.225 kb on + strand, within PFLU_RS02100at 473.225 kb on + strand, within PFLU_RS02100at 473.225 kb on + strand, within PFLU_RS02100at 473.225 kb on + strand, within PFLU_RS02100at 473.225 kb on + strand, within PFLU_RS02100at 473.225 kb on + strand, within PFLU_RS02100at 473.225 kb on + strand, within PFLU_RS02100at 473.225 kb on + strand, within PFLU_RS02100at 473.225 kb on + strand, within PFLU_RS02100at 473.225 kb on + strand, within PFLU_RS02100at 473.226 kb on - strand, within PFLU_RS02100at 473.226 kb on - strand, within PFLU_RS02100at 473.226 kb on - strand, within PFLU_RS02100at 473.226 kb on - strand, within PFLU_RS02100at 473.226 kb on - strand, within PFLU_RS02100at 473.226 kb on - strand, within PFLU_RS02100at 473.226 kb on - strand, within PFLU_RS02100at 473.226 kb on - strand, within PFLU_RS02100at 473.226 kb on - strand, within PFLU_RS02100at 473.255 kb on + strand, within PFLU_RS02100at 473.255 kb on + strand, within PFLU_RS02100at 473.255 kb on + strand, within PFLU_RS02100at 473.255 kb on + strand, within PFLU_RS02100at 473.256 kb on - strand, within PFLU_RS02100at 473.256 kb on - strand, within PFLU_RS02100at 473.279 kb on + strand, within PFLU_RS02100at 473.279 kb on + strand, within PFLU_RS02100at 473.398 kb on + strand, within PFLU_RS02100at 473.398 kb on + strand, within PFLU_RS02100at 473.398 kb on + strand, within PFLU_RS02100at 473.399 kb on - strand, within PFLU_RS02100at 473.467 kb on + strand, within PFLU_RS02100at 473.467 kb on + strand, within PFLU_RS02100at 473.467 kb on + strand, within PFLU_RS02100at 473.468 kb on - strand, within PFLU_RS02100

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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470,406 + PFLU_RS02080 0.37 -1.3
470,406 + PFLU_RS02080 0.37 -0.5
470,407 - PFLU_RS02080 0.37 +0.7
470,407 - PFLU_RS02080 0.37 +1.1
470,407 - PFLU_RS02080 0.37 -0.9
470,407 - PFLU_RS02080 0.37 +0.9
470,407 - PFLU_RS02080 0.37 +0.3
470,462 - PFLU_RS02080 0.45 +4.4
470,517 + PFLU_RS02080 0.52 +0.0
470,517 + PFLU_RS02080 0.52 +0.4
470,518 - PFLU_RS02080 0.53 -0.7
470,518 - PFLU_RS02080 0.53 -1.5
470,518 - PFLU_RS02080 0.53 +0.5
470,619 + PFLU_RS02080 0.66 +0.6
470,620 - PFLU_RS02080 0.67 +2.5
470,620 - PFLU_RS02080 0.67 +0.9
470,620 - PFLU_RS02080 0.67 +0.6
470,620 - PFLU_RS02080 0.67 -0.0
470,620 - PFLU_RS02080 0.67 +0.4
470,622 + PFLU_RS02080 0.67 +0.2
470,622 + PFLU_RS02080 0.67 -0.3
470,622 + PFLU_RS02080 0.67 -0.3
470,623 - PFLU_RS02080 0.67 -1.1
470,623 - PFLU_RS02080 0.67 -1.1
470,623 - PFLU_RS02080 0.67 +1.2
470,869 + +0.4
470,869 + -1.8
470,869 + +0.9
470,869 + +2.7
470,869 + -1.5
470,869 + +2.8
470,870 - -0.3
470,870 - +0.7
470,870 - +2.8
470,887 + +2.7
470,888 - -0.2
470,891 + -0.3
470,891 + +2.0
470,891 + +0.5
470,891 + -0.2
470,891 + -0.1
470,892 - +1.0
470,892 - -1.4
470,917 + PFLU_RS02085 0.12 +1.3
470,917 + PFLU_RS02085 0.12 +1.3
470,917 + PFLU_RS02085 0.12 -2.1
470,917 + PFLU_RS02085 0.12 +2.2
470,917 + PFLU_RS02085 0.12 -1.9
470,918 - PFLU_RS02085 0.13 -1.4
470,918 - PFLU_RS02085 0.13 +2.1
470,918 - PFLU_RS02085 0.13 +0.1
471,063 + PFLU_RS02085 0.44 +0.3
471,063 + PFLU_RS02085 0.44 +1.9
471,063 + PFLU_RS02085 0.44 -0.5
471,063 + PFLU_RS02085 0.44 -1.6
471,063 + PFLU_RS02085 0.44 -0.9
471,063 + PFLU_RS02085 0.44 +1.4
471,064 - PFLU_RS02085 0.44 +1.5
471,064 - PFLU_RS02085 0.44 -1.3
471,064 - PFLU_RS02085 0.44 +4.1
471,064 - PFLU_RS02085 0.44 +1.4
471,064 - PFLU_RS02085 0.44 -0.5
471,064 - PFLU_RS02085 0.44 +1.6
471,064 - PFLU_RS02085 0.44 -2.5
471,064 - PFLU_RS02085 0.44 +0.3
471,064 - PFLU_RS02085 0.44 -1.2
471,064 - PFLU_RS02085 0.44 -0.5
471,064 - PFLU_RS02085 0.44 +1.5
471,064 - PFLU_RS02085 0.44 +0.8
471,064 - PFLU_RS02085 0.44 -0.9
471,128 + PFLU_RS02085 0.58 -0.1
471,743 + PFLU_RS02090 0.36 -1.2
471,743 + PFLU_RS02090 0.36 -0.1
471,743 + PFLU_RS02090 0.36 +2.8
471,743 + PFLU_RS02090 0.36 +0.5
471,743 + PFLU_RS02090 0.36 -0.5
471,743 + PFLU_RS02090 0.36 +0.2
471,743 + PFLU_RS02090 0.36 +1.1
471,743 + PFLU_RS02090 0.36 +1.7
471,744 - PFLU_RS02090 0.37 -1.6
471,744 - PFLU_RS02090 0.37 +2.0
471,744 - PFLU_RS02090 0.37 +0.8
471,744 - PFLU_RS02090 0.37 -2.1
471,744 - PFLU_RS02090 0.37 +1.0
471,744 - PFLU_RS02090 0.37 -0.2
471,744 - PFLU_RS02090 0.37 -1.7
471,744 - PFLU_RS02090 0.37 +0.1
471,744 - PFLU_RS02090 0.37 +0.1
471,744 - PFLU_RS02090 0.37 -1.3
472,033 + PFLU_RS02090 0.61 -0.5
472,033 + PFLU_RS02090 0.61 +2.1
472,033 + PFLU_RS02090 0.61 -1.2
472,034 - PFLU_RS02090 0.61 -0.4
472,034 - PFLU_RS02090 0.61 +2.3
472,034 - PFLU_RS02090 0.61 +0.9
472,034 - PFLU_RS02090 0.61 +1.5
472,102 + PFLU_RS02090 0.67 -1.7
472,103 - PFLU_RS02090 0.67 +2.1
472,108 + PFLU_RS02090 0.68 +1.7
472,108 + PFLU_RS02090 0.68 +0.9
472,108 + PFLU_RS02090 0.68 -0.2
472,109 - PFLU_RS02090 0.68 +0.7
472,109 - PFLU_RS02090 0.68 -0.9
472,138 + PFLU_RS02090 0.70 -1.4
472,139 - PFLU_RS02090 0.70 +1.4
472,139 - PFLU_RS02090 0.70 +2.0
472,474 + -1.9
472,474 + +0.9
472,474 + -2.4
472,475 - -1.1
472,475 - -0.7
472,563 + PFLU_RS02095 0.17 -0.6
472,563 + PFLU_RS02095 0.17 -0.3
472,563 + PFLU_RS02095 0.17 -0.1
472,563 + PFLU_RS02095 0.17 -0.5
472,564 - PFLU_RS02095 0.17 -0.7
472,564 - PFLU_RS02095 0.17 +1.4
472,564 - PFLU_RS02095 0.17 -1.3
472,564 - PFLU_RS02095 0.17 -1.6
472,564 - PFLU_RS02095 0.17 -0.5
472,564 - PFLU_RS02095 0.17 -2.2
472,706 + PFLU_RS02095 0.47 +0.8
472,706 + PFLU_RS02095 0.47 -2.3
472,706 + PFLU_RS02095 0.47 -0.7
472,706 + PFLU_RS02095 0.47 +0.3
472,707 - PFLU_RS02095 0.47 -0.9
473,096 + PFLU_RS02100 0.18 +0.7
473,096 + PFLU_RS02100 0.18 -0.9
473,096 + PFLU_RS02100 0.18 -0.1
473,096 + PFLU_RS02100 0.18 +0.1
473,096 + PFLU_RS02100 0.18 -0.8
473,097 - PFLU_RS02100 0.18 +1.8
473,097 - PFLU_RS02100 0.18 -0.5
473,097 - PFLU_RS02100 0.18 +2.0
473,097 - PFLU_RS02100 0.18 -1.6
473,097 - PFLU_RS02100 0.18 +0.7
473,097 - PFLU_RS02100 0.18 -0.5
473,103 - PFLU_RS02100 0.19 -1.9
473,156 + PFLU_RS02100 0.26 -1.1
473,209 + PFLU_RS02100 0.33 -1.8
473,224 - PFLU_RS02100 0.35 +0.9
473,225 + PFLU_RS02100 0.35 -0.3
473,225 + PFLU_RS02100 0.35 -1.5
473,225 + PFLU_RS02100 0.35 +1.3
473,225 + PFLU_RS02100 0.35 +2.5
473,225 + PFLU_RS02100 0.35 +3.5
473,225 + PFLU_RS02100 0.35 +1.7
473,225 + PFLU_RS02100 0.35 +1.4
473,225 + PFLU_RS02100 0.35 +0.3
473,225 + PFLU_RS02100 0.35 -0.4
473,225 + PFLU_RS02100 0.35 -0.3
473,225 + PFLU_RS02100 0.35 -1.4
473,225 + PFLU_RS02100 0.35 +0.3
473,225 + PFLU_RS02100 0.35 +0.3
473,225 + PFLU_RS02100 0.35 -1.6
473,225 + PFLU_RS02100 0.35 -1.9
473,225 + PFLU_RS02100 0.35 -2.5
473,226 - PFLU_RS02100 0.35 -0.7
473,226 - PFLU_RS02100 0.35 -0.9
473,226 - PFLU_RS02100 0.35 -1.2
473,226 - PFLU_RS02100 0.35 +1.5
473,226 - PFLU_RS02100 0.35 +1.1
473,226 - PFLU_RS02100 0.35 +0.5
473,226 - PFLU_RS02100 0.35 +1.8
473,226 - PFLU_RS02100 0.35 -1.6
473,226 - PFLU_RS02100 0.35 -0.7
473,255 + PFLU_RS02100 0.39 -2.9
473,255 + PFLU_RS02100 0.39 -2.0
473,255 + PFLU_RS02100 0.39 -0.3
473,255 + PFLU_RS02100 0.39 +0.4
473,256 - PFLU_RS02100 0.39 -2.1
473,256 - PFLU_RS02100 0.39 -1.5
473,279 + PFLU_RS02100 0.43 +1.2
473,279 + PFLU_RS02100 0.43 -1.6
473,398 + PFLU_RS02100 0.58 +2.5
473,398 + PFLU_RS02100 0.58 +0.3
473,398 + PFLU_RS02100 0.58 +0.8
473,399 - PFLU_RS02100 0.59 -0.5
473,467 + PFLU_RS02100 0.68 +0.2
473,467 + PFLU_RS02100 0.68 -2.5
473,467 + PFLU_RS02100 0.68 +0.5
473,468 - PFLU_RS02100 0.68 +1.6

Or see this region's nucleotide sequence