Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01775

Experiment: H2 deepwell acetate and casamino FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01770 and MMP_RS01775 are separated by 341 nucleotidesMMP_RS01775 and MMP_RS01780 are separated by 160 nucleotidesMMP_RS01780 and MMP_RS01785 are separated by 70 nucleotides MMP_RS01770: MMP_RS01770 - ATP-dependent endonuclease, at 328,459 to 330,339 _RS01770 MMP_RS01775: MMP_RS01775 - TIGR00297 family protein, at 330,681 to 331,394 _RS01775 MMP_RS01780: MMP_RS01780 - TrmJ/YjtD family RNA methyltransferase, at 331,555 to 332,259 _RS01780 MMP_RS01785: MMP_RS01785 - hypothetical protein, at 332,330 to 332,743 _RS01785 Position (kb) 330 331 332Strain fitness (log2 ratio) -1 0 1at 329.863 kb on + strand, within MMP_RS01770at 329.866 kb on - strand, within MMP_RS01770at 329.867 kb on + strand, within MMP_RS01770at 329.915 kb on + strand, within MMP_RS01770at 329.915 kb on + strand, within MMP_RS01770at 329.915 kb on + strand, within MMP_RS01770at 329.931 kb on - strand, within MMP_RS01770at 329.946 kb on - strand, within MMP_RS01770at 329.946 kb on - strand, within MMP_RS01770at 329.950 kb on - strand, within MMP_RS01770at 329.951 kb on + strand, within MMP_RS01770at 329.952 kb on - strand, within MMP_RS01770at 329.952 kb on - strand, within MMP_RS01770at 329.952 kb on - strand, within MMP_RS01770at 329.953 kb on + strand, within MMP_RS01770at 329.953 kb on + strand, within MMP_RS01770at 330.035 kb on - strand, within MMP_RS01770at 330.036 kb on + strand, within MMP_RS01770at 330.119 kb on - strand, within MMP_RS01770at 330.120 kb on + strand, within MMP_RS01770at 330.154 kb on - strandat 330.154 kb on - strandat 330.158 kb on - strandat 330.158 kb on - strandat 330.159 kb on + strandat 330.162 kb on + strandat 330.199 kb on - strandat 330.200 kb on + strandat 330.204 kb on - strandat 330.245 kb on - strandat 330.246 kb on + strandat 330.246 kb on + strandat 330.271 kb on - strandat 330.272 kb on + strandat 330.279 kb on - strandat 330.300 kb on + strandat 330.337 kb on - strandat 330.477 kb on - strandat 330.493 kb on + strandat 330.496 kb on - strandat 330.506 kb on - strandat 330.527 kb on - strandat 330.538 kb on - strandat 330.598 kb on + strandat 330.599 kb on - strandat 330.603 kb on + strandat 330.604 kb on - strandat 330.604 kb on - strandat 330.628 kb on + strandat 330.756 kb on - strand, within MMP_RS01775at 330.967 kb on - strand, within MMP_RS01775at 331.348 kb on - strandat 331.372 kb on - strandat 331.388 kb on + strandat 331.388 kb on + strandat 331.439 kb on - strandat 331.439 kb on - strandat 331.463 kb on + strandat 331.471 kb on + strandat 331.499 kb on + strandat 331.503 kb on - strandat 331.504 kb on + strandat 331.510 kb on + strandat 331.806 kb on - strand, within MMP_RS01780at 331.831 kb on + strand, within MMP_RS01780at 331.884 kb on + strand, within MMP_RS01780at 332.120 kb on - strand, within MMP_RS01780at 332.146 kb on - strand, within MMP_RS01780at 332.159 kb on - strand, within MMP_RS01780at 332.159 kb on - strand, within MMP_RS01780at 332.159 kb on - strand, within MMP_RS01780at 332.160 kb on + strand, within MMP_RS01780at 332.228 kb on - strandat 332.245 kb on + strandat 332.258 kb on + strandat 332.294 kb on + strandat 332.296 kb on - strandat 332.336 kb on + strandat 332.337 kb on - strandat 332.372 kb on - strand, within MMP_RS01785

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 deepwell acetate and casamino FREE
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329,863 + MMP_RS01770 0.75 +0.8
329,866 - MMP_RS01770 0.75 +0.7
329,867 + MMP_RS01770 0.75 +0.7
329,915 + MMP_RS01770 0.77 -0.2
329,915 + MMP_RS01770 0.77 +0.2
329,915 + MMP_RS01770 0.77 +0.1
329,931 - MMP_RS01770 0.78 -0.7
329,946 - MMP_RS01770 0.79 -0.9
329,946 - MMP_RS01770 0.79 -0.2
329,950 - MMP_RS01770 0.79 -0.9
329,951 + MMP_RS01770 0.79 +1.0
329,952 - MMP_RS01770 0.79 -0.1
329,952 - MMP_RS01770 0.79 -0.4
329,952 - MMP_RS01770 0.79 -0.6
329,953 + MMP_RS01770 0.79 +0.5
329,953 + MMP_RS01770 0.79 -0.3
330,035 - MMP_RS01770 0.84 +0.9
330,036 + MMP_RS01770 0.84 +0.6
330,119 - MMP_RS01770 0.88 -0.1
330,120 + MMP_RS01770 0.88 +0.9
330,154 - +0.9
330,154 - -0.0
330,158 - -0.4
330,158 - -0.5
330,159 + -0.7
330,162 + -0.3
330,199 - +0.4
330,200 + -0.5
330,204 - +0.9
330,245 - +0.1
330,246 + +0.7
330,246 + +1.0
330,271 - +0.3
330,272 + +0.3
330,279 - +0.9
330,300 + +0.0
330,337 - +0.1
330,477 - +0.6
330,493 + -0.5
330,496 - +0.8
330,506 - +0.0
330,527 - +0.6
330,538 - +0.0
330,598 + -0.6
330,599 - -0.8
330,603 + +0.6
330,604 - +0.0
330,604 - +0.2
330,628 + +0.7
330,756 - MMP_RS01775 0.11 -0.1
330,967 - MMP_RS01775 0.40 -0.9
331,348 - -0.0
331,372 - +0.2
331,388 + -0.5
331,388 + +0.5
331,439 - +0.1
331,439 - +0.0
331,463 + +1.0
331,471 + +0.9
331,499 + -0.0
331,503 - +0.0
331,504 + +0.3
331,510 + -0.5
331,806 - MMP_RS01780 0.36 +1.1
331,831 + MMP_RS01780 0.39 +1.0
331,884 + MMP_RS01780 0.47 -0.4
332,120 - MMP_RS01780 0.80 +0.2
332,146 - MMP_RS01780 0.84 +0.0
332,159 - MMP_RS01780 0.86 -0.1
332,159 - MMP_RS01780 0.86 -1.0
332,159 - MMP_RS01780 0.86 -0.2
332,160 + MMP_RS01780 0.86 -0.8
332,228 - +0.1
332,245 + -0.0
332,258 + +0.1
332,294 + -0.3
332,296 - +0.3
332,336 + +0.3
332,337 - -0.2
332,372 - MMP_RS01785 0.10 +0.9

Or see this region's nucleotide sequence