Strain Fitness in Dechlorosoma suillum PS around Dsui_3498

Experiment: ALP with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3496 and Dsui_3497 are separated by 15 nucleotidesDsui_3497 and Dsui_3498 overlap by 8 nucleotidesDsui_3498 and Dsui_3499 are separated by 26 nucleotides Dsui_3496: Dsui_3496 - sulfite oxidase-like oxidoreductase, at 3,761,201 to 3,761,761 _3496 Dsui_3497: Dsui_3497 - lipoprotein signal peptidase, at 3,761,777 to 3,762,277 _3497 Dsui_3498: Dsui_3498 - isoleucyl-tRNA synthetase, at 3,762,270 to 3,765,062 _3498 Dsui_3499: Dsui_3499 - riboflavin kinase/FMN adenylyltransferase, at 3,765,089 to 3,766,012 _3499 Position (kb) 3762 3763 3764 3765 3766Strain fitness (log2 ratio) -1 0 1at 3761.327 kb on + strandat 3761.444 kb on + strand, within Dsui_3496at 3761.462 kb on + strandat 3761.539 kb on - strand, within Dsui_3496at 3761.539 kb on - strand, within Dsui_3496at 3761.545 kb on - strand, within Dsui_3496at 3761.551 kb on + strandat 3761.552 kb on + strand, within Dsui_3496at 3761.702 kb on + strand, within Dsui_3496

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM
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3,761,327 + +0.5
3,761,444 + Dsui_3496 0.43 +0.5
3,761,462 + +0.5
3,761,539 - Dsui_3496 0.60 -0.5
3,761,539 - Dsui_3496 0.60 -0.1
3,761,545 - Dsui_3496 0.61 -0.2
3,761,551 + +0.5
3,761,552 + Dsui_3496 0.63 -1.1
3,761,702 + Dsui_3496 0.89 -1.1

Or see this region's nucleotide sequence