Experiment: ALP with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3494 and Dsui_3495 are separated by 83 nucleotides Dsui_3495 and Dsui_3496 overlap by 1 nucleotides Dsui_3496 and Dsui_3497 are separated by 15 nucleotides Dsui_3497 and Dsui_3498 overlap by 8 nucleotides
Dsui_3494: Dsui_3494 - (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase, at 3,759,745 to 3,760,674
_3494
Dsui_3495: Dsui_3495 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 3,760,758 to 3,761,201
_3495
Dsui_3496: Dsui_3496 - sulfite oxidase-like oxidoreductase, at 3,761,201 to 3,761,761
_3496
Dsui_3497: Dsui_3497 - lipoprotein signal peptidase, at 3,761,777 to 3,762,277
_3497
Dsui_3498: Dsui_3498 - isoleucyl-tRNA synthetase, at 3,762,270 to 3,765,062
_3498
Position (kb)
3761
3762 Strain fitness (log2 ratio)
-2
-1
0
1 at 3761.125 kb on - strand, within Dsui_3495 at 3761.179 kb on - strand at 3761.254 kb on + strand at 3761.327 kb on + strand at 3761.444 kb on + strand, within Dsui_3496 at 3761.462 kb on + strand at 3761.539 kb on - strand, within Dsui_3496 at 3761.539 kb on - strand, within Dsui_3496 at 3761.545 kb on - strand, within Dsui_3496 at 3761.551 kb on + strand at 3761.552 kb on + strand, within Dsui_3496 at 3761.702 kb on + strand, within Dsui_3496
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM remove 3,761,125 - Dsui_3495 0.83 -1.8 3,761,179 - -1.9 3,761,254 + +0.5 3,761,327 + +0.5 3,761,444 + Dsui_3496 0.43 +0.5 3,761,462 + +0.5 3,761,539 - Dsui_3496 0.60 -0.5 3,761,539 - Dsui_3496 0.60 -0.1 3,761,545 - Dsui_3496 0.61 -0.2 3,761,551 + +0.5 3,761,552 + Dsui_3496 0.63 -1.1 3,761,702 + Dsui_3496 0.89 -1.1
Or see this region's nucleotide sequence