Experiment: ALP with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3367 and Dsui_3368 are separated by 175 nucleotides Dsui_3368 and Dsui_3369 are separated by 79 nucleotides
Dsui_3367: Dsui_3367 - ABC-type sugar transport system, periplasmic component, at 3,607,849 to 3,609,213
_3367
Dsui_3368: Dsui_3368 - hypothetical protein, at 3,609,389 to 3,610,102
_3368
Dsui_3369: Dsui_3369 - acyl-CoA dehydrogenase, at 3,610,182 to 3,611,366
_3369
Position (kb)
3609
3610
3611 Strain fitness (log2 ratio)
-2
-1
0
1 at 3608.452 kb on - strand, within Dsui_3367 at 3608.497 kb on + strand at 3608.500 kb on - strand, within Dsui_3367 at 3608.505 kb on - strand, within Dsui_3367 at 3608.569 kb on - strand, within Dsui_3367 at 3608.684 kb on - strand, within Dsui_3367 at 3608.743 kb on - strand, within Dsui_3367 at 3608.775 kb on - strand, within Dsui_3367 at 3608.978 kb on + strand at 3608.987 kb on + strand at 3609.010 kb on + strand at 3609.018 kb on - strand, within Dsui_3367 at 3609.143 kb on + strand at 3609.146 kb on - strand at 3609.171 kb on + strand at 3609.220 kb on + strand at 3609.220 kb on + strand at 3609.220 kb on + strand at 3609.228 kb on - strand at 3609.228 kb on - strand at 3609.228 kb on - strand at 3609.228 kb on - strand at 3609.230 kb on + strand at 3609.417 kb on - strand at 3609.460 kb on - strand at 3609.490 kb on + strand, within Dsui_3368 at 3609.700 kb on - strand at 3609.700 kb on - strand, within Dsui_3368 at 3609.815 kb on + strand, within Dsui_3368 at 3609.825 kb on + strand at 3609.825 kb on + strand at 3609.825 kb on + strand, within Dsui_3368 at 3609.825 kb on + strand, within Dsui_3368 at 3609.859 kb on + strand, within Dsui_3368 at 3609.874 kb on + strand, within Dsui_3368 at 3609.874 kb on + strand, within Dsui_3368 at 3610.051 kb on - strand at 3610.272 kb on + strand at 3610.354 kb on + strand, within Dsui_3369 at 3610.445 kb on + strand, within Dsui_3369 at 3610.524 kb on + strand, within Dsui_3369 at 3610.527 kb on + strand, within Dsui_3369 at 3610.576 kb on + strand, within Dsui_3369 at 3610.764 kb on + strand, within Dsui_3369 at 3611.001 kb on + strand, within Dsui_3369 at 3611.002 kb on + strand, within Dsui_3369 at 3611.049 kb on - strand, within Dsui_3369
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM remove 3,608,452 - Dsui_3367 0.44 -0.3 3,608,497 + -1.1 3,608,500 - Dsui_3367 0.48 -0.5 3,608,505 - Dsui_3367 0.48 +0.3 3,608,569 - Dsui_3367 0.53 -0.3 3,608,684 - Dsui_3367 0.61 -0.2 3,608,743 - Dsui_3367 0.65 -0.6 3,608,775 - Dsui_3367 0.68 -0.1 3,608,978 + -0.5 3,608,987 + +0.5 3,609,010 + -0.5 3,609,018 - Dsui_3367 0.86 -0.2 3,609,143 + -0.5 3,609,146 - -0.0 3,609,171 + -0.5 3,609,220 + +0.5 3,609,220 + -1.1 3,609,220 + +0.5 3,609,228 - +0.5 3,609,228 - -0.3 3,609,228 - -0.4 3,609,228 - +0.0 3,609,230 + -0.5 3,609,417 - +0.5 3,609,460 - +0.5 3,609,490 + Dsui_3368 0.14 -1.5 3,609,700 - +0.5 3,609,700 - Dsui_3368 0.44 -0.5 3,609,815 + Dsui_3368 0.60 -1.1 3,609,825 + -1.1 3,609,825 + +0.5 3,609,825 + Dsui_3368 0.61 +0.5 3,609,825 + Dsui_3368 0.61 -0.5 3,609,859 + Dsui_3368 0.66 -2.3 3,609,874 + Dsui_3368 0.68 -1.1 3,609,874 + Dsui_3368 0.68 +0.5 3,610,051 - -1.5 3,610,272 + -0.3 3,610,354 + Dsui_3369 0.15 -0.3 3,610,445 + Dsui_3369 0.22 -0.2 3,610,524 + Dsui_3369 0.29 -0.4 3,610,527 + Dsui_3369 0.29 -0.0 3,610,576 + Dsui_3369 0.33 -0.2 3,610,764 + Dsui_3369 0.49 -0.3 3,611,001 + Dsui_3369 0.69 -0.7 3,611,002 + Dsui_3369 0.69 -0.1 3,611,049 - Dsui_3369 0.73 -0.5
Or see this region's nucleotide sequence