Strain Fitness in Dechlorosoma suillum PS around Dsui_3051

Experiment: ALP with nitrate 50 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_3048 and Dsui_3049 are separated by 15 nucleotidesDsui_3049 and Dsui_3050 are separated by 4 nucleotidesDsui_3050 and Dsui_3051 are separated by 70 nucleotidesDsui_3051 and Dsui_3052 are separated by 467 nucleotides Dsui_3048: Dsui_3048 - NADH/F420H2 dehydrogenase, subunit C, at 3,264,673 to 3,265,266 _3048 Dsui_3049: Dsui_3049 - NADH-quinone oxidoreductase, B subunit, at 3,265,282 to 3,265,758 _3049 Dsui_3050: Dsui_3050 - NADH:ubiquinone oxidoreductase subunit 3 (chain A), at 3,265,763 to 3,266,137 _3050 Dsui_3051: Dsui_3051 - tRNA-Leu, at 3,266,208 to 3,266,292 _3051 Dsui_3052: Dsui_3052 - triosephosphate isomerase, at 3,266,760 to 3,267,485 _3052 Position (kb) 3266 3267Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3265.762 kb on - strandat 3265.769 kb on - strandat 3265.790 kb on - strandat 3265.790 kb on - strandat 3265.790 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM
remove
3,265,762 - -0.3
3,265,769 - -0.5
3,265,790 - -1.5
3,265,790 - +0.4
3,265,790 - -4.0

Or see this region's nucleotide sequence