Experiment: ALP with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2797 and Dsui_2798 are separated by 291 nucleotides Dsui_2798 and Dsui_2799 are separated by 108 nucleotides
Dsui_2797: Dsui_2797 - LysM repeat-containing protein, at 2,965,052 to 2,966,869
_2797
Dsui_2798: Dsui_2798 - arabinose efflux permease family protein, at 2,967,161 to 2,968,381
_2798
Dsui_2799: Dsui_2799 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, at 2,968,490 to 2,970,502
_2799
Position (kb)
2967
2968
2969 Strain fitness (log2 ratio)
-2
-1
0
1 at 2966.224 kb on + strand, within Dsui_2797 at 2966.254 kb on + strand, within Dsui_2797 at 2966.261 kb on - strand, within Dsui_2797 at 2966.261 kb on - strand, within Dsui_2797 at 2966.262 kb on - strand, within Dsui_2797 at 2966.546 kb on - strand at 2966.657 kb on - strand, within Dsui_2797 at 2966.657 kb on - strand, within Dsui_2797 at 2966.694 kb on - strand at 2966.715 kb on - strand at 2966.715 kb on - strand at 2966.738 kb on + strand at 2966.746 kb on - strand at 2966.813 kb on - strand at 2966.981 kb on - strand at 2967.011 kb on + strand at 2967.011 kb on + strand at 2967.019 kb on - strand at 2967.019 kb on - strand at 2967.063 kb on + strand at 2967.180 kb on - strand at 2967.245 kb on + strand at 2967.280 kb on + strand at 2967.288 kb on - strand, within Dsui_2798 at 2967.312 kb on - strand, within Dsui_2798 at 2967.315 kb on + strand, within Dsui_2798 at 2967.789 kb on + strand, within Dsui_2798 at 2967.789 kb on + strand, within Dsui_2798 at 2968.041 kb on + strand, within Dsui_2798 at 2968.091 kb on - strand, within Dsui_2798 at 2968.116 kb on + strand, within Dsui_2798 at 2968.130 kb on + strand, within Dsui_2798 at 2968.149 kb on - strand at 2968.173 kb on - strand, within Dsui_2798 at 2968.218 kb on + strand, within Dsui_2798 at 2968.233 kb on + strand, within Dsui_2798 at 2968.233 kb on + strand, within Dsui_2798 at 2968.241 kb on - strand at 2968.297 kb on + strand at 2968.316 kb on + strand at 2968.418 kb on - strand at 2968.540 kb on - strand at 2968.615 kb on - strand at 2968.633 kb on + strand at 2968.710 kb on - strand, within Dsui_2799 at 2968.754 kb on + strand at 2968.764 kb on + strand at 2968.820 kb on + strand at 2968.844 kb on - strand, within Dsui_2799 at 2968.909 kb on + strand at 2968.953 kb on + strand, within Dsui_2799 at 2969.116 kb on + strand at 2969.116 kb on + strand, within Dsui_2799 at 2969.340 kb on - strand, within Dsui_2799 at 2969.381 kb on - strand, within Dsui_2799
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM remove 2,966,224 + Dsui_2797 0.64 -1.0 2,966,254 + Dsui_2797 0.66 -1.3 2,966,261 - Dsui_2797 0.67 -1.8 2,966,261 - Dsui_2797 0.67 +0.6 2,966,262 - Dsui_2797 0.67 -0.4 2,966,546 - -0.4 2,966,657 - Dsui_2797 0.88 -2.2 2,966,657 - Dsui_2797 0.88 +0.6 2,966,694 - +0.6 2,966,715 - -2.2 2,966,715 - -0.4 2,966,738 + -0.1 2,966,746 - -2.0 2,966,813 - -0.0 2,966,981 - -0.4 2,967,011 + -0.7 2,967,011 + +0.6 2,967,019 - -1.0 2,967,019 - +0.6 2,967,063 + -1.0 2,967,180 - +0.6 2,967,245 + +0.1 2,967,280 + -1.4 2,967,288 - Dsui_2798 0.10 -1.4 2,967,312 - Dsui_2798 0.12 -1.0 2,967,315 + Dsui_2798 0.13 -2.0 2,967,789 + Dsui_2798 0.51 -1.4 2,967,789 + Dsui_2798 0.51 +0.6 2,968,041 + Dsui_2798 0.72 -2.2 2,968,091 - Dsui_2798 0.76 -1.4 2,968,116 + Dsui_2798 0.78 -2.0 2,968,130 + Dsui_2798 0.79 -1.4 2,968,149 - +0.6 2,968,173 - Dsui_2798 0.83 -1.0 2,968,218 + Dsui_2798 0.87 +0.3 2,968,233 + Dsui_2798 0.88 -2.4 2,968,233 + Dsui_2798 0.88 -1.0 2,968,241 - -0.4 2,968,297 + -0.7 2,968,316 + -0.4 2,968,418 - -1.0 2,968,540 - -0.6 2,968,615 - -0.4 2,968,633 + +0.6 2,968,710 - Dsui_2799 0.11 +0.3 2,968,754 + +0.6 2,968,764 + +0.6 2,968,820 + -0.4 2,968,844 - Dsui_2799 0.18 -0.4 2,968,909 + -0.4 2,968,953 + Dsui_2799 0.23 -1.8 2,969,116 + +0.6 2,969,116 + Dsui_2799 0.31 -2.3 2,969,340 - Dsui_2799 0.42 -0.6 2,969,381 - Dsui_2799 0.44 -0.4
Or see this region's nucleotide sequence