Strain Fitness in Dechlorosoma suillum PS around Dsui_2798

Experiment: ALP with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2797 and Dsui_2798 are separated by 291 nucleotidesDsui_2798 and Dsui_2799 are separated by 108 nucleotides Dsui_2797: Dsui_2797 - LysM repeat-containing protein, at 2,965,052 to 2,966,869 _2797 Dsui_2798: Dsui_2798 - arabinose efflux permease family protein, at 2,967,161 to 2,968,381 _2798 Dsui_2799: Dsui_2799 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, at 2,968,490 to 2,970,502 _2799 Position (kb) 2967 2968 2969Strain fitness (log2 ratio) -2 -1 0 1at 2966.224 kb on + strand, within Dsui_2797at 2966.254 kb on + strand, within Dsui_2797at 2966.261 kb on - strand, within Dsui_2797at 2966.261 kb on - strand, within Dsui_2797at 2966.262 kb on - strand, within Dsui_2797at 2966.546 kb on - strandat 2966.657 kb on - strand, within Dsui_2797at 2966.657 kb on - strand, within Dsui_2797at 2966.694 kb on - strandat 2966.715 kb on - strandat 2966.715 kb on - strandat 2966.738 kb on + strandat 2966.746 kb on - strandat 2966.813 kb on - strandat 2966.981 kb on - strandat 2967.011 kb on + strandat 2967.011 kb on + strandat 2967.019 kb on - strandat 2967.019 kb on - strandat 2967.063 kb on + strandat 2967.180 kb on - strandat 2967.245 kb on + strandat 2967.280 kb on + strandat 2967.288 kb on - strand, within Dsui_2798at 2967.312 kb on - strand, within Dsui_2798at 2967.315 kb on + strand, within Dsui_2798at 2967.789 kb on + strand, within Dsui_2798at 2967.789 kb on + strand, within Dsui_2798at 2968.041 kb on + strand, within Dsui_2798at 2968.091 kb on - strand, within Dsui_2798at 2968.116 kb on + strand, within Dsui_2798at 2968.130 kb on + strand, within Dsui_2798at 2968.149 kb on - strandat 2968.173 kb on - strand, within Dsui_2798at 2968.218 kb on + strand, within Dsui_2798at 2968.233 kb on + strand, within Dsui_2798at 2968.233 kb on + strand, within Dsui_2798at 2968.241 kb on - strandat 2968.297 kb on + strandat 2968.316 kb on + strandat 2968.418 kb on - strandat 2968.540 kb on - strandat 2968.615 kb on - strandat 2968.633 kb on + strandat 2968.710 kb on - strand, within Dsui_2799at 2968.754 kb on + strandat 2968.764 kb on + strandat 2968.820 kb on + strandat 2968.844 kb on - strand, within Dsui_2799at 2968.909 kb on + strandat 2968.953 kb on + strand, within Dsui_2799at 2969.116 kb on + strandat 2969.116 kb on + strand, within Dsui_2799at 2969.340 kb on - strand, within Dsui_2799at 2969.381 kb on - strand, within Dsui_2799

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM
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2,966,224 + Dsui_2797 0.64 -1.0
2,966,254 + Dsui_2797 0.66 -1.3
2,966,261 - Dsui_2797 0.67 -1.8
2,966,261 - Dsui_2797 0.67 +0.6
2,966,262 - Dsui_2797 0.67 -0.4
2,966,546 - -0.4
2,966,657 - Dsui_2797 0.88 -2.2
2,966,657 - Dsui_2797 0.88 +0.6
2,966,694 - +0.6
2,966,715 - -2.2
2,966,715 - -0.4
2,966,738 + -0.1
2,966,746 - -2.0
2,966,813 - -0.0
2,966,981 - -0.4
2,967,011 + -0.7
2,967,011 + +0.6
2,967,019 - -1.0
2,967,019 - +0.6
2,967,063 + -1.0
2,967,180 - +0.6
2,967,245 + +0.1
2,967,280 + -1.4
2,967,288 - Dsui_2798 0.10 -1.4
2,967,312 - Dsui_2798 0.12 -1.0
2,967,315 + Dsui_2798 0.13 -2.0
2,967,789 + Dsui_2798 0.51 -1.4
2,967,789 + Dsui_2798 0.51 +0.6
2,968,041 + Dsui_2798 0.72 -2.2
2,968,091 - Dsui_2798 0.76 -1.4
2,968,116 + Dsui_2798 0.78 -2.0
2,968,130 + Dsui_2798 0.79 -1.4
2,968,149 - +0.6
2,968,173 - Dsui_2798 0.83 -1.0
2,968,218 + Dsui_2798 0.87 +0.3
2,968,233 + Dsui_2798 0.88 -2.4
2,968,233 + Dsui_2798 0.88 -1.0
2,968,241 - -0.4
2,968,297 + -0.7
2,968,316 + -0.4
2,968,418 - -1.0
2,968,540 - -0.6
2,968,615 - -0.4
2,968,633 + +0.6
2,968,710 - Dsui_2799 0.11 +0.3
2,968,754 + +0.6
2,968,764 + +0.6
2,968,820 + -0.4
2,968,844 - Dsui_2799 0.18 -0.4
2,968,909 + -0.4
2,968,953 + Dsui_2799 0.23 -1.8
2,969,116 + +0.6
2,969,116 + Dsui_2799 0.31 -2.3
2,969,340 - Dsui_2799 0.42 -0.6
2,969,381 - Dsui_2799 0.44 -0.4

Or see this region's nucleotide sequence