Strain Fitness in Dechlorosoma suillum PS around Dsui_2779

Experiment: ALP with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2777 and Dsui_2778 are separated by 142 nucleotidesDsui_2778 and Dsui_2779 are separated by 183 nucleotidesDsui_2779 and Dsui_2780 are separated by 13 nucleotidesDsui_2780 and Dsui_2781 are separated by 14 nucleotides Dsui_2777: Dsui_2777 - aminoacyl-histidine dipeptidase, at 2,939,292 to 2,940,860 _2777 Dsui_2778: Dsui_2778 - isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase, at 2,941,003 to 2,941,524 _2778 Dsui_2779: Dsui_2779 - PAS domain S-box, at 2,941,708 to 2,944,797 _2779 Dsui_2780: Dsui_2780 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 2,944,811 to 2,945,245 _2780 Dsui_2781: Dsui_2781 - PAS domain S-box, at 2,945,260 to 2,949,126 _2781 Position (kb) 2941 2942 2943 2944 2945Strain fitness (log2 ratio) -1 0 1 2 3 4at 2940.957 kb on + strandat 2940.959 kb on + strandat 2941.192 kb on - strandat 2941.240 kb on - strand, within Dsui_2778at 2941.316 kb on + strand, within Dsui_2778at 2941.335 kb on + strand, within Dsui_2778at 2941.352 kb on + strand, within Dsui_2778at 2941.683 kb on - strandat 2941.684 kb on - strandat 2941.769 kb on + strandat 2941.793 kb on + strandat 2941.799 kb on + strandat 2941.886 kb on + strandat 2942.286 kb on - strandat 2942.336 kb on - strand, within Dsui_2779at 2942.346 kb on - strandat 2942.418 kb on + strandat 2942.633 kb on - strandat 2942.848 kb on + strandat 2943.079 kb on - strandat 2943.259 kb on + strandat 2943.363 kb on + strandat 2943.755 kb on + strand, within Dsui_2779at 2944.241 kb on - strandat 2944.509 kb on - strandat 2944.515 kb on + strandat 2944.756 kb on - strandat 2944.783 kb on + strandat 2944.791 kb on - strandat 2944.801 kb on - strandat 2945.170 kb on - strandat 2945.170 kb on - strand, within Dsui_2780at 2945.212 kb on - strandat 2945.462 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM
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2,940,957 + +3.8
2,940,959 + +0.6
2,941,192 - -0.4
2,941,240 - Dsui_2778 0.45 -1.7
2,941,316 + Dsui_2778 0.60 +0.2
2,941,335 + Dsui_2778 0.64 +0.9
2,941,352 + Dsui_2778 0.67 -0.0
2,941,683 - -0.4
2,941,684 - -0.4
2,941,769 + -0.4
2,941,793 + +0.6
2,941,799 + +0.6
2,941,886 + -0.4
2,942,286 - +0.6
2,942,336 - Dsui_2779 0.20 +0.6
2,942,346 - +0.6
2,942,418 + +0.6
2,942,633 - +0.6
2,942,848 + +0.6
2,943,079 - -0.4
2,943,259 + +0.6
2,943,363 + +0.6
2,943,755 + Dsui_2779 0.66 -1.4
2,944,241 - +0.6
2,944,509 - +0.6
2,944,515 + -0.4
2,944,756 - -0.4
2,944,783 + +0.6
2,944,791 - -0.4
2,944,801 - +0.6
2,945,170 - +0.6
2,945,170 - Dsui_2780 0.83 -1.0
2,945,212 - -1.7
2,945,462 + -0.4

Or see this region's nucleotide sequence