Experiment: ALP with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2745 and Dsui_2746 are separated by 209 nucleotides Dsui_2746 and Dsui_2747 are separated by 102 nucleotides
Dsui_2745: Dsui_2745 - methyl-accepting chemotaxis protein, at 2,899,398 to 2,901,026
_2745
Dsui_2746: Dsui_2746 - ATP-binding cassette protein, ChvD family, at 2,901,236 to 2,902,900
_2746
Dsui_2747: Dsui_2747 - uncharacterized integral membrane protein, at 2,903,003 to 2,903,860
_2747
Position (kb)
2901
2902
2903 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2900.670 kb on - strand, within Dsui_2745 at 2900.693 kb on + strand, within Dsui_2745 at 2900.786 kb on + strand, within Dsui_2745 at 2900.810 kb on + strand at 2900.960 kb on - strand at 2901.211 kb on + strand at 2901.212 kb on + strand at 2901.221 kb on + strand at 2901.229 kb on - strand at 2901.268 kb on + strand at 2901.281 kb on - strand at 2901.350 kb on + strand at 2901.385 kb on + strand at 2901.422 kb on + strand, within Dsui_2746 at 2901.430 kb on - strand at 2901.553 kb on + strand, within Dsui_2746 at 2901.553 kb on + strand, within Dsui_2746 at 2901.759 kb on - strand, within Dsui_2746 at 2901.831 kb on + strand, within Dsui_2746 at 2901.839 kb on - strand, within Dsui_2746 at 2901.943 kb on - strand, within Dsui_2746 at 2902.020 kb on - strand, within Dsui_2746 at 2902.027 kb on + strand, within Dsui_2746 at 2902.068 kb on + strand, within Dsui_2746 at 2902.171 kb on + strand, within Dsui_2746 at 2902.186 kb on - strand, within Dsui_2746 at 2902.225 kb on + strand, within Dsui_2746 at 2902.317 kb on + strand, within Dsui_2746 at 2902.352 kb on + strand, within Dsui_2746 at 2902.401 kb on + strand, within Dsui_2746 at 2902.406 kb on + strand, within Dsui_2746 at 2902.406 kb on + strand, within Dsui_2746 at 2902.406 kb on + strand, within Dsui_2746 at 2902.432 kb on + strand, within Dsui_2746 at 2902.464 kb on + strand, within Dsui_2746 at 2902.473 kb on + strand, within Dsui_2746 at 2902.595 kb on - strand, within Dsui_2746 at 2902.752 kb on + strand at 2902.755 kb on + strand at 2902.770 kb on - strand at 2902.816 kb on + strand at 2902.819 kb on + strand at 2902.864 kb on + strand at 2902.864 kb on + strand at 2902.864 kb on + strand at 2902.872 kb on - strand at 2902.872 kb on - strand at 2902.888 kb on + strand at 2902.922 kb on - strand at 2902.958 kb on + strand at 2903.016 kb on - strand at 2903.018 kb on + strand at 2903.174 kb on - strand, within Dsui_2747 at 2903.189 kb on - strand, within Dsui_2747 at 2903.313 kb on - strand, within Dsui_2747 at 2903.316 kb on + strand, within Dsui_2747 at 2903.348 kb on + strand, within Dsui_2747 at 2903.361 kb on + strand, within Dsui_2747 at 2903.369 kb on - strand, within Dsui_2747 at 2903.374 kb on - strand, within Dsui_2747 at 2903.460 kb on - strand at 2903.531 kb on - strand, within Dsui_2747 at 2903.615 kb on - strand, within Dsui_2747 at 2903.658 kb on + strand, within Dsui_2747 at 2903.666 kb on - strand, within Dsui_2747 at 2903.666 kb on - strand, within Dsui_2747 at 2903.666 kb on - strand, within Dsui_2747 at 2903.666 kb on - strand, within Dsui_2747 at 2903.714 kb on - strand, within Dsui_2747 at 2903.754 kb on + strand, within Dsui_2747 at 2903.784 kb on - strand at 2903.792 kb on + strand at 2903.820 kb on + strand at 2903.820 kb on + strand at 2903.820 kb on + strand at 2903.831 kb on + strand at 2903.846 kb on - strand at 2903.854 kb on + strand at 2903.867 kb on - strand at 2903.874 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM remove 2,900,670 - Dsui_2745 0.78 -1.4 2,900,693 + Dsui_2745 0.79 -1.4 2,900,786 + Dsui_2745 0.85 -0.4 2,900,810 + -0.4 2,900,960 - +0.6 2,901,211 + +0.2 2,901,212 + +0.2 2,901,221 + +0.5 2,901,229 - +0.6 2,901,268 + +0.3 2,901,281 - +0.6 2,901,350 + -0.0 2,901,385 + +0.2 2,901,422 + Dsui_2746 0.11 -0.2 2,901,430 - -0.4 2,901,553 + Dsui_2746 0.19 +0.2 2,901,553 + Dsui_2746 0.19 +0.4 2,901,759 - Dsui_2746 0.31 -1.4 2,901,831 + Dsui_2746 0.36 -0.0 2,901,839 - Dsui_2746 0.36 -0.4 2,901,943 - Dsui_2746 0.42 -0.4 2,902,020 - Dsui_2746 0.47 +0.6 2,902,027 + Dsui_2746 0.48 +0.2 2,902,068 + Dsui_2746 0.50 +0.2 2,902,171 + Dsui_2746 0.56 +0.2 2,902,186 - Dsui_2746 0.57 -0.4 2,902,225 + Dsui_2746 0.59 +0.2 2,902,317 + Dsui_2746 0.65 +0.1 2,902,352 + Dsui_2746 0.67 +0.1 2,902,401 + Dsui_2746 0.70 -0.1 2,902,406 + Dsui_2746 0.70 -0.1 2,902,406 + Dsui_2746 0.70 +0.3 2,902,406 + Dsui_2746 0.70 +0.2 2,902,432 + Dsui_2746 0.72 +0.3 2,902,464 + Dsui_2746 0.74 +0.2 2,902,473 + Dsui_2746 0.74 +0.3 2,902,595 - Dsui_2746 0.82 -0.4 2,902,752 + +0.3 2,902,755 + +0.1 2,902,770 - -1.0 2,902,816 + +0.1 2,902,819 + +0.2 2,902,864 + +0.2 2,902,864 + -0.0 2,902,864 + +0.2 2,902,872 - +0.6 2,902,872 - -0.4 2,902,888 + +0.5 2,902,922 - +0.6 2,902,958 + +0.6 2,903,016 - +0.6 2,903,018 + -0.2 2,903,174 - Dsui_2747 0.20 +0.6 2,903,189 - Dsui_2747 0.22 -0.4 2,903,313 - Dsui_2747 0.36 -1.0 2,903,316 + Dsui_2747 0.36 -2.0 2,903,348 + Dsui_2747 0.40 -0.4 2,903,361 + Dsui_2747 0.42 -0.8 2,903,369 - Dsui_2747 0.43 +1.6 2,903,374 - Dsui_2747 0.43 +0.6 2,903,460 - -1.0 2,903,531 - Dsui_2747 0.62 +0.6 2,903,615 - Dsui_2747 0.71 +0.6 2,903,658 + Dsui_2747 0.76 -2.0 2,903,666 - Dsui_2747 0.77 -1.0 2,903,666 - Dsui_2747 0.77 -1.0 2,903,666 - Dsui_2747 0.77 -0.4 2,903,666 - Dsui_2747 0.77 -0.4 2,903,714 - Dsui_2747 0.83 -0.4 2,903,754 + Dsui_2747 0.88 -1.5 2,903,784 - +0.6 2,903,792 + -0.9 2,903,820 + -0.0 2,903,820 + -0.2 2,903,820 + -0.4 2,903,831 + +0.6 2,903,846 - +0.6 2,903,854 + -1.4 2,903,867 - +0.6 2,903,874 - -2.9
Or see this region's nucleotide sequence