Experiment: ALP with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2665 and Dsui_2666 are separated by 144 nucleotides Dsui_2666 and Dsui_2667 are separated by 12 nucleotides Dsui_2667 and Dsui_2668 overlap by 4 nucleotides
Dsui_2665: Dsui_2665 - putative nucleoside-diphosphate sugar epimerase, at 2,817,459 to 2,818,313
_2665
Dsui_2666: Dsui_2666 - putative transcriptional regulator, at 2,818,458 to 2,818,901
_2666
Dsui_2667: Dsui_2667 - acetyltransferase, at 2,818,914 to 2,819,447
_2667
Dsui_2668: Dsui_2668 - putative phosphatase, at 2,819,444 to 2,821,390
_2668
Position (kb)
2818
2819
2820 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2817.922 kb on + strand at 2817.923 kb on + strand, within Dsui_2665 at 2818.005 kb on + strand at 2818.013 kb on - strand at 2818.059 kb on - strand at 2818.093 kb on + strand at 2818.357 kb on - strand at 2818.378 kb on + strand at 2818.392 kb on - strand at 2818.447 kb on + strand at 2818.455 kb on + strand at 2818.471 kb on - strand at 2818.569 kb on - strand, within Dsui_2666 at 2818.597 kb on - strand, within Dsui_2666 at 2818.693 kb on - strand, within Dsui_2666 at 2818.754 kb on - strand, within Dsui_2666 at 2818.758 kb on + strand, within Dsui_2666 at 2819.006 kb on - strand at 2819.118 kb on + strand, within Dsui_2667 at 2819.274 kb on + strand, within Dsui_2667 at 2819.274 kb on + strand, within Dsui_2667 at 2819.389 kb on + strand, within Dsui_2667 at 2819.407 kb on + strand at 2819.455 kb on - strand at 2819.617 kb on + strand at 2819.662 kb on + strand at 2819.964 kb on + strand, within Dsui_2668 at 2820.061 kb on + strand at 2820.104 kb on - strand at 2820.128 kb on - strand at 2820.211 kb on + strand at 2820.239 kb on - strand at 2820.333 kb on + strand at 2820.368 kb on + strand, within Dsui_2668 at 2820.369 kb on + strand, within Dsui_2668 at 2820.371 kb on + strand at 2820.400 kb on + strand at 2820.401 kb on + strand at 2820.439 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM remove 2,817,922 + -0.5 2,817,923 + Dsui_2665 0.54 -0.5 2,818,005 + +0.5 2,818,013 - -0.5 2,818,059 - +0.5 2,818,093 + +0.5 2,818,357 - -0.5 2,818,378 + -0.5 2,818,392 - +0.5 2,818,447 + +0.2 2,818,455 + -0.0 2,818,471 - -0.5 2,818,569 - Dsui_2666 0.25 +0.5 2,818,597 - Dsui_2666 0.31 +0.5 2,818,693 - Dsui_2666 0.53 -1.5 2,818,754 - Dsui_2666 0.67 -0.5 2,818,758 + Dsui_2666 0.68 +0.2 2,819,006 - +0.5 2,819,118 + Dsui_2667 0.38 +0.5 2,819,274 + Dsui_2667 0.67 -2.8 2,819,274 + Dsui_2667 0.67 -1.1 2,819,389 + Dsui_2667 0.89 -2.3 2,819,407 + +0.5 2,819,455 - +0.5 2,819,617 + -2.1 2,819,662 + +0.5 2,819,964 + Dsui_2668 0.27 -0.5 2,820,061 + +0.5 2,820,104 - -1.1 2,820,128 - -0.5 2,820,211 + -1.5 2,820,239 - -0.5 2,820,333 + +0.5 2,820,368 + Dsui_2668 0.47 -1.5 2,820,369 + Dsui_2668 0.48 -1.1 2,820,371 + -1.1 2,820,400 + +0.5 2,820,401 + -0.5 2,820,439 - +0.5
Or see this region's nucleotide sequence